FMO03888.5prime Sequence
525 bp (525 high quality bases) assembled on 2008-07-21
> FMO03888.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGAAAAGCT
GAGAATGGCGGCAAGGGTCTTTGTGTATGGCACGTTGAAGCGCGGTGAGC
CCAATCACCACTGGCTGACGAAAAAGGAGAACGGCCAAGCCCGATTCCTT
GGAAGGGGGAAAACGGAAACGAAGTTTCCCCTGGTTGTCGGAACCCGCTA
CAACATCCCATTTCTGCTCGCCCGCCCGGGTGAGGGGAACCACATAGAAG
GCGAAGTCTACGAAGTGGACGAGACCATGCTCTCCAAACTGGACATACTA
GAAGACTACCCGGACTACTATGATCGCGAGCAACAAACCATATTAATGGA
ACAGAATGAAACCATTCAGTGCTGGCTGTACCTGATTCGCAACTTCCCAG
ACAAGATGCTGGCCAAGGAGCTGCTGATCTCGTACCACAACACGCCGGAG
AGGCCGTACAATGAAAAGTCAGTACGCACTGTTTCAGCCAGAGATGATCT
TTCTTACGCAAGCTTTCTAGACCAT
FMO03888.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2811-RA | 720 | CG2811-RA | 90..560 | 37..507 | 2355 | 100 | Plus |
| CG2811-RB | 669 | CG2811-RB | 90..520 | 37..467 | 2155 | 100 | Plus |
| CG2811-RC | 566 | CG2811-RC | 1..417 | 51..467 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24940072..24940394 | 359..37 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 24939866..24940013 | 507..360 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:23 has no hits.
FMO03888.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:37 Download gff for
FMO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..560 | 30..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:32 Download gff for
FMO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 71..547 | 30..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:43 Download gff for
FMO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2811-RA | 84..560 | 30..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:43 Download gff for
FMO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24939866..24940013 | 360..507 | 100 | <- | Minus |
| 2R | 24940072..24940398 | 31..359 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:37 Download gff for
FMO03888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20827389..20827536 | 360..507 | 100 | <- | Minus |
| arm_2R | 20827595..20827921 | 31..359 | 98 | <- | Minus |
