FMO03891.5prime Sequence
1236 bp (1021 high quality bases) assembled on 2008-07-21
> FMO03891.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGTGCCGGCGA
TCATTGTTGGGCGTAACGACAAAATGCCTAAGACTTTCGTCCACGCAGCA
ACACAGATCGGGTCAGCCGGAATGTGACCAAGCCATCGGCCTCTTGCCCG
CCTACTCGGATGCAGATCGTTTGAAGATCTTGAAGACGATTAATGAAAGC
AGCATGAATCAGATAGCCAACTACGACATAACCAAGGCAAGGGCAACCAA
GCTGCAAAACTGGAAGAACCGTCACGGACCGCTGCAGGAACTCAGCGACA
TCCTGTATGTGGAGGGATTCGGACTGAAGGTGACCACCAAGTTCTTTAAG
AGTCTGCTTGCGCCGCCGAGCAGTGGGAGCGCACAAGTAGGGGAAAATAG
ACCAAAGACTGCACGAGTCGCGCCCTTTATAACACCGGCCATGGACGAGG
GACAGCGTTCACGTATTGTATCTGCTGTAGGGGTGCGCATCGGAGTGACC
AGTGTAAGCTGGGCGCGATTAAAGATCGGAAGCAACGAAGCTCCCTGTCT
GCTCACGCACTGGCAGCACCATGAGCTGAACGACAAGAAGCTGCATTTGT
CAGAACTTTCCCGCCGATGCCTCTATGTATCTCACCAGATACCCGTGGCC
GATTGCTACGTCATGGAGAGTCCACAAATGGCCCAGGCCAGCAGCAACCC
AGGGAGCATCGATCAACAGAACGTGAACATCCAGAAGGCCCAGGTTTCCG
CAATCATGAGCTTCTCCTTGATGGCCCGATCAGATGGCGACGAGAACAAG
ACGAACAACGTCTACTACATGCGACGTTTTCTCTCAGCCCGACTATTTAA
TCACATGGTGGGTACTGAGCGCGTGTCGTCCGAGGATACGATATTGGCCA
TGATGCGAACCCATTACAACGTGGAACATCAGGATCCCCGAAACAGAGCC
CCCGTTGAAGCTGCAACAAACAGATCGACTTTCCCGCTGACCTACGCCTC
GGAATTCTCAAAACAAGGAGCGCTACCAGGCGCGAGCTTCTAGGCCAGGC
ACTTCCTCTTCAGCTTAGGCATTACTTGGTCTCGTGCTTCAGCAAGAATC
CGGCAAGCATTGCATCTGGTATCCTCGCCAACTCTAAACTCCTTCTCAGT
CGAGCACATGCAGGCTTTCCAGAACATCGTTGGGCGCGGTCAGGTAATTG
GCATAACTATCCTAAACTAATACCAGAATACCAAGA
FMO03891.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14450-RA | 1502 | CG14450-RA | 74..1185 | 36..1155 | 5140 | 98 | Plus |
| CG14450-RB | 1506 | CG14450-RB | 74..1189 | 36..1155 | 5090 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22726588..22727481 | 1118..217 | 3990 | 98.2 | Minus |
| 3L | 28110227 | 3L | 22727532..22727716 | 220..36 | 925 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:59 has no hits.
FMO03891.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:25 Download gff for
FMO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..1172 | 36..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:41 Download gff for
FMO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 64..1162 | 36..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:52 Download gff for
FMO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14450-RA | 74..1172 | 36..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:52 Download gff for
FMO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22726564..22727477 | 221..1143 | 97 | <- | Minus |
| 3L | 22727532..22727716 | 36..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:25 Download gff for
FMO03891.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22719664..22720577 | 221..1143 | 97 | <- | Minus |
| arm_3L | 22720632..22720816 | 36..220 | 100 | | Minus |
