FMO03893.5prime Sequence
636 bp (636 high quality bases) assembled on 2008-07-21
> FMO03893.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGGCAGCCGCACAACAA
ACTGAATTCCAAAAGAATTTTAGAGTGATTGTAGAGAAGATCTTCAATCA
CTGGCAGGATCTCCGGCTGGCGGTGGAGCATGGCATGGGCGGACGCAATG
GCCAACAGGTGGCCATAGAAATCATGGACTACACCTACCAGTACTGCGTG
TCCAACGAAAATATCACGCAAGGCGAACTGGTGGAGGTCCTGGAGGAGCT
GATGGACCAGGAGTTTAACACCCTCTGCGACGACGACTCCATTCCGGAGA
TCTGCCGGAATCTGCTGCGCTACAAATTGATGGCCCAGCAGAACCAGTTT
CCGCAAATAGAGGCTGAATTGAGTAAACTTCCTGCTGGCAAGGAGTGGCT
GCGTCCGGATGTTAAGATCACCTACACACCCATCGATGGGGACTCCTCAT
CCGATGAGGACATGGACGACAGCGACGAGGAGGACGATAATGAAATGGGC
CAGGGCGACGAGGAAACTCCCAGCGGCAGTGGTCGGATGACGCGATCGCA
GGCACGAAAGCAGCAGGCTGAGGAGTTTGTGGAACCGGAAGACGGCTGGA
CCACCGTGCGAAGAAAAAGCAAGCTTTCTAGACCAT
FMO03893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14543-RA | 657 | CG14543-RA | 28..612 | 33..617 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26056845..26057305 | 157..617 | 2305 | 100 | Plus |
| 3R | 32079331 | 3R | 26056657..26056784 | 33..160 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:27:15 has no hits.
FMO03893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:19 Download gff for
FMO03893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 29..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:26 Download gff for
FMO03893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 29..623 | 29..628 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:21 Download gff for
FMO03893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14543-RA | 26..620 | 29..628 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:21 Download gff for
FMO03893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26056655..26056782 | 29..158 | 98 | -> | Plus |
| 3R | 26056847..26057313 | 159..623 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:19 Download gff for
FMO03893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21882377..21882504 | 29..158 | 98 | -> | Plus |
| arm_3R | 21882569..21883035 | 159..623 | 98 | -> | Plus |
