FMO03894.5prime Sequence
1234 bp (1014 high quality bases) assembled on 2008-07-21
> FMO03894.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCAGGTCCACTGC
CCGAAATCAGCGAAGAACAGCGCGCCATATTGGAGAAGTTTCGCAAGCAA
ATGGATGATGCGTTGGTTGGAACCCACGACGATTACTTCTTGGTGCGCTG
GCTAAGAGCTCGAAAATGGAATCTGGAGGCAGCGGAGAAAATGCTGAGAG
CTAGTTTGAAAACACGCGCCATGTGGAATGTGGACAACATCGAGAAGTGG
GATCCACCGAAGGCATTGCAGGAGTATCTGCCATACGGCCTCATGGGCTA
CGACAACGAAGGATCACCGGTGCTGGTCTGCCCCTTTGCCAACTTCGACA
TGTGGGGCATGATGCACTGCGTCACGCGGTTTGAGTTCCAAAAGTACCTG
GTCCTGCTGCTCGAGCGCTTCATGAAGATCGCCTACGATCAGAGTCAAAA
GCACGGATGGCGAGCCCGCCAGCTGGTTGTATTTTTCGACATGCAGGATG
TGAACCTGAAGCAGTACGCCTGGCGACCGGCTGCCGAATGTGTGATCTCT
ACGGTGAAGCAATACGAGGCCAACTTCCCGGAGCTCCTCAAGATGTGCTA
CATCATCAACGCACCCAAGCTCTTCTCGGTGGCGTTCAACATTGTTAAGA
AATTCCTGGACGAGAACACCACCAGCAAGATCGTGATCTACAAATCCGGA
GTGGACCGCTGGCAGGAGCAACTCTTCTCCCATGTGAACCGAAAGGCATT
TCCGAAGGCCTGGGGCGGCGAGATGGTGGACAGGAACGGAGATCCCCAGT
GCAAGGCACTGATGGTCTGGGGAGGCAAGCTGCCGGAGGAGCTTTACATT
GATCAGAGTAGCCAGCAGAGCGATCGAGACTTTGTGGAGGCCCAGGTTCC
CAAGGGCGACAGTTGAAGCTGCACTTTAAGGTCAACGTTGAGGAGCAGAG
ATCCTCTCCTGGGAGTTCCGCACCTTTGACTACGACATCAAATTCGGCAT
CTACAGCGTGGACGAAAAGAACGGGCGAGAGCGCAGCGAGGTGCCCCTGG
GAACGGTGTACCTCAACGAGATGGACGAGATTGGTTACATCTCCTACCCG
ACGACACCACTTTACCGGGTGTTCCGACACTCGCAGCTACTTGCCCACAA
GAGCTCCGCTACTGGTGACCTTATCTCTGGAGAGGAGGAGGCAATCGGAC
CGTGAACCCCCGAAGTGTAGACACAAACCCTCCG
FMO03894.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13893-RA | 2198 | CG13893-RA | 583..1752 | 33..1191 | 5255 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 599708..600483 | 1093..320 | 3625 | 99 | Minus |
| 3L | 28110227 | 3L | 600547..600664 | 320..203 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 600843..600914 | 158..87 | 360 | 100 | Minus |
| 3L | 28110227 | 3L | 603371..603426 | 88..33 | 280 | 100 | Minus |
| 3L | 28110227 | 3L | 600727..600772 | 202..157 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:09:49 has no hits.
FMO03894.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:47 Download gff for
FMO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 578..1645 | 27..1093 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:34 Download gff for
FMO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 571..1638 | 27..1093 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:43 Download gff for
FMO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13893-RA | 578..1645 | 27..1093 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:43 Download gff for
FMO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 599708..600482 | 321..1093 | 98 | <- | Minus |
| 3L | 600547..600664 | 203..320 | 100 | <- | Minus |
| 3L | 600727..600770 | 159..202 | 100 | <- | Minus |
| 3L | 600843..600912 | 89..158 | 100 | <- | Minus |
| 3L | 603371..603431 | 27..88 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:47 Download gff for
FMO03894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 599708..600482 | 321..1093 | 98 | <- | Minus |
| arm_3L | 600547..600664 | 203..320 | 100 | <- | Minus |
| arm_3L | 600727..600770 | 159..202 | 100 | <- | Minus |
| arm_3L | 600843..600912 | 89..158 | 100 | <- | Minus |
| arm_3L | 603371..603431 | 27..88 | 93 | | Minus |
