FMO03896.5prime Sequence
1058 bp (957 high quality bases) assembled on 2008-07-15
> FMO03896.5prime
GTATAGCATACCTTATACGAAGTTATCAGTCGACATGAAACAATCCAAGG
ACGAAGACAAGGAGGAATCGCCGGTTCAACCGACGACCCACAATTCCAGC
GCAGGCAGCAACGGCCACGACGCCAAATCTCCGGTGGTCACTACTGCACC
AGCGGCAACTTGTTCCGTATCGGTTTCGGATGCTTCGGGGGCCGGAGCTT
CCGTTCGCACCACTGGACGGGTGAAGAAACCCAAACAGGTGTACGATCCC
TCGGACAACTATGTGTCCCGGGCCAGCAGCAACCGCAACTCTCTCTCTTC
AGTCCCGGCCACCTCCAATGTCCAGTCACCGCCAGTCAAGGAGGCCACCG
ATTCGCAGGACTCCACAACCAGTCCTGTTTCGGAGCAGCAGCAGCAGCAG
CTACAGCAAGCGGCTCAACTTCGCAACTTCGACACGTGCCAGAAGTGTGG
CAAAAGCGAACCCAAGCGCGGATCTGGCCATAAGAGCAACTTCCTCACTT
GCAAGGGCTGCATGCAGAAATGGCACTTCCCCTGCTTGCCGATCACGTTC
CACAACCAGAGCACAGCCCGCAAGAAGTTCAAGTGCGACAAGTGTCGCTA
CTGCCGGTTATGCAACGTGAGGGGGCCAGGTCTTTCCATTTGCAGTTTAT
GCGTGGATGCCTATCACCCGGACTGCAATGATCCCACTCTCAAGCAGAGC
AAAGCCGTCGAGGCCAATCCCAATTGGAGATGCTTCCGATGCGAGGCGTG
TAACATCGGCGGCAGCACGAGTGCATCCAGCGAGGAGCAAACGGGGGCCA
GGAAATCCACTGCGAGCCGCGAGGACAGGCCCAGCCGGTGGTGCCGAGAG
TCGATTGCGGGTCGCAGAGCCGCGTCCAATCGGAGCCCCACCCGGGCAAG
AAAAGGCAGCGAATATTGAGAAGCTACCCCAACGTAAACGGCCCTTGAAA
ATCAGAAAAAGAGAAGGAGTCCAAAGGACAAGGATGAAGGATCCGGCCAA
ATAAGTCAGGTGGGAAAGGCCAGCCGGATAATTTGTGAAATGAACATGAT
GGAGATAT
FMO03896.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2662-RB | 1765 | CG2662-RB | 87..1059 | 35..1004 | 4405 | 97.3 | Plus |
| CG2662-RA | 1645 | CG2662-RA | 87..1059 | 35..1004 | 4405 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2699842..2700296 | 522..975 | 1815 | 95.6 | Plus |
| X | 23542271 | X | 2699042..2699339 | 225..522 | 1490 | 100 | Plus |
| X | 23542271 | X | 2698787..2698978 | 35..226 | 960 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 929..981 | 725..673 | 112 | 67.9 | Minus |
FMO03896.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-15 15:18:40 Download gff for
FMO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 78..1025 | 29..975 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:42 Download gff for
FMO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 81..1028 | 29..975 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:01 Download gff for
FMO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2662-RA | 81..1028 | 29..975 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:01 Download gff for
FMO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2698781..2698978 | 29..226 | 98 | -> | Plus |
| X | 2699044..2699338 | 227..521 | 100 | -> | Plus |
| X | 2699842..2700296 | 522..975 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:42 Download gff for
FMO03896.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2592814..2593011 | 29..226 | 98 | -> | Plus |
| arm_X | 2593077..2593371 | 227..521 | 100 | -> | Plus |
| arm_X | 2593875..2594329 | 522..975 | 95 | | Plus |
