Clone FMO03902 Report

Search the DGRC for FMO03902

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:2
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG4623-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03902.5prime Sequence

1029 bp (133 high quality bases) assembled on 2008-07-21

> FMO03902.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCCACATGAGCGAGCACA
CAAAGGAAATCGAAGCTCTGCCGCCCACCTTGCAGGACTTCAAGGCTCCC
GATCTGCCGGCCAATAAGCCAGTGCTCTTCTTCCATCCGTACAACTTCCA
TGCGCAAAAAGTTCTTATGGTCTTCTACAAGAAGAAGATCGACTTCTTTC
CCTATGTGGTGGACCTGTGCAATGGCGAGCAGTACTCCAATTGGTTCCTA
AACCTCAATCCCAAGGGCGATGTGCCAGTGCTCCAGGATGGCGCCCTCGT
CATTCCCAGCTCGACGCACATCATCAACTATGTGGAGAGCAAATTTCGCG
GTGATCGATCGCTGAAGCCAGCGCACAACTCCAAGGAATTCGATCAAATG
CTGATCTTCGAGCAGGCCATGGCCCGCCTTCCAATGGGAACACTCAACCT
GGGCTCCTTCATACCCGACGATCTGAAGCTGGTGCCCAAGGCGCCCTTCA
TCGGACCCGTGCGCCAGTCCTGCCTGAAAAACAATGAATAGGTGCTGGAT
CTGCTGCGCCACTCAGTGGACGAACAGGCGACCAAAAAAGCAGCGCTGCA
TCACAAGCTGGACATACAGTTGCGCCGCCACGAGCTGGCCTCGTCCCGCG
AGGAATTCCAGAAGGTTCTGGATGCCGTGCGGCACTTTCTGCTCTATGTG
GAGCAGGAGCTAACCGCCCAGGCGCCACGCGTTGAGTGGCTGACCGGATA
CGAACTGAGCGTGGAGGATATCTCGCTGGGATTGCTGCTGCATCGACTGT
ATCAGCTGGGATTCGAGAATCAGATCTGGACCTTCGGAAAGCTGCCGCAA
GGGGAGTATACTTCTTGCGCTTCCGGCACGCGAGTCCTTCCACCGCCTGC
ACCGAGCTATTTGCCATACTGCGCGAAATGTGGACCCGAACGCAGGCAAC
TATATCTAGGAGCGGGCGCCGGCTTCCTGGGTATGGACATGTTCGTCGCT
TCGCGCACAAGGCAGCTTTTCTATACCAT

FMO03902.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4623-RA 1597 CG4623-RA 353..1333 38..1011 4415 97.1 Plus
CG4623-RB 1594 CG4623-RB 353..1330 38..1011 4360 96.8 Plus
CG4623-RC 1511 CG4623-RC 353..1301 38..980 4310 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5143563..5144053 528..1011 1880 95.5 Plus
3L 28110227 3L 5143073..5143265 161..353 950 99.5 Plus
3L 28110227 3L 5143323..5143497 353..527 815 97.7 Plus
3L 28110227 3L 5142305..5142430 38..163 615 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:12:37 has no hits.

FMO03902.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:15 Download gff for FMO03902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1338 38..1016 96   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:01 Download gff for FMO03902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 351..1336 38..1016 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:02 Download gff for FMO03902.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4623-RA 353..1338 38..1016 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:02 Download gff for FMO03902.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5142305..5142427 38..160 99 -> Plus
3L 5143073..5143265 161..353 99 -> Plus
3L 5143324..5143497 354..527 97 -> Plus
3L 5143563..5144058 528..1016 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:15 Download gff for FMO03902.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5135405..5135527 38..160 99 -> Plus
arm_3L 5136173..5136365 161..353 99 -> Plus
arm_3L 5136424..5136597 354..527 97 -> Plus
arm_3L 5136663..5137158 528..1016 95   Plus