FMO03902.5prime Sequence
1029 bp (133 high quality bases) assembled on 2008-07-21
> FMO03902.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCCACATGAGCGAGCACA
CAAAGGAAATCGAAGCTCTGCCGCCCACCTTGCAGGACTTCAAGGCTCCC
GATCTGCCGGCCAATAAGCCAGTGCTCTTCTTCCATCCGTACAACTTCCA
TGCGCAAAAAGTTCTTATGGTCTTCTACAAGAAGAAGATCGACTTCTTTC
CCTATGTGGTGGACCTGTGCAATGGCGAGCAGTACTCCAATTGGTTCCTA
AACCTCAATCCCAAGGGCGATGTGCCAGTGCTCCAGGATGGCGCCCTCGT
CATTCCCAGCTCGACGCACATCATCAACTATGTGGAGAGCAAATTTCGCG
GTGATCGATCGCTGAAGCCAGCGCACAACTCCAAGGAATTCGATCAAATG
CTGATCTTCGAGCAGGCCATGGCCCGCCTTCCAATGGGAACACTCAACCT
GGGCTCCTTCATACCCGACGATCTGAAGCTGGTGCCCAAGGCGCCCTTCA
TCGGACCCGTGCGCCAGTCCTGCCTGAAAAACAATGAATAGGTGCTGGAT
CTGCTGCGCCACTCAGTGGACGAACAGGCGACCAAAAAAGCAGCGCTGCA
TCACAAGCTGGACATACAGTTGCGCCGCCACGAGCTGGCCTCGTCCCGCG
AGGAATTCCAGAAGGTTCTGGATGCCGTGCGGCACTTTCTGCTCTATGTG
GAGCAGGAGCTAACCGCCCAGGCGCCACGCGTTGAGTGGCTGACCGGATA
CGAACTGAGCGTGGAGGATATCTCGCTGGGATTGCTGCTGCATCGACTGT
ATCAGCTGGGATTCGAGAATCAGATCTGGACCTTCGGAAAGCTGCCGCAA
GGGGAGTATACTTCTTGCGCTTCCGGCACGCGAGTCCTTCCACCGCCTGC
ACCGAGCTATTTGCCATACTGCGCGAAATGTGGACCCGAACGCAGGCAAC
TATATCTAGGAGCGGGCGCCGGCTTCCTGGGTATGGACATGTTCGTCGCT
TCGCGCACAAGGCAGCTTTTCTATACCAT
FMO03902.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4623-RA | 1597 | CG4623-RA | 353..1333 | 38..1011 | 4415 | 97.1 | Plus |
CG4623-RB | 1594 | CG4623-RB | 353..1330 | 38..1011 | 4360 | 96.8 | Plus |
CG4623-RC | 1511 | CG4623-RC | 353..1301 | 38..980 | 4310 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5143563..5144053 | 528..1011 | 1880 | 95.5 | Plus |
3L | 28110227 | 3L | 5143073..5143265 | 161..353 | 950 | 99.5 | Plus |
3L | 28110227 | 3L | 5143323..5143497 | 353..527 | 815 | 97.7 | Plus |
3L | 28110227 | 3L | 5142305..5142430 | 38..163 | 615 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:37 has no hits.
FMO03902.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:15 Download gff for
FMO03902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1338 | 38..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:01 Download gff for
FMO03902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 351..1336 | 38..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:02 Download gff for
FMO03902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4623-RA | 353..1338 | 38..1016 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:02 Download gff for
FMO03902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5142305..5142427 | 38..160 | 99 | -> | Plus |
3L | 5143073..5143265 | 161..353 | 99 | -> | Plus |
3L | 5143324..5143497 | 354..527 | 97 | -> | Plus |
3L | 5143563..5144058 | 528..1016 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:15 Download gff for
FMO03902.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5135405..5135527 | 38..160 | 99 | -> | Plus |
arm_3L | 5136173..5136365 | 161..353 | 99 | -> | Plus |
arm_3L | 5136424..5136597 | 354..527 | 97 | -> | Plus |
arm_3L | 5136663..5137158 | 528..1016 | 95 | | Plus |