FMO03906.5prime Sequence
1227 bp (943 high quality bases) assembled on 2008-07-21
> FMO03906.5prime
AGCATACATAAAACGAAGTTATCAGTCGACATGAGGGTGGCGGCGGAAGG
AGGGAAGACTACGGCAGCGAGGACTCCATGAGCACCACCCACCTGGACTG
GCCCTTTCTCATCAAGGGCATCCTGGAGGGGCAGACGTGCACGCCCACTG
CGCCGGAGCCGCTGGCCGCCATCCTGTGGGCCATCTTCGCCGTGTTTGGC
ATCGTGTACGCGCTACTCGGCTACCGATGCCTGCGCGCCGTGGGCTTTCT
CAGTGGACTGCTGGTGGGCGCCAACGGGATCTTCATTCTGCAGGACTTCC
AGATCACCTTCCTGGGCAAGCCGGCGGACTCGGCGCTGGCCATTGTGGCG
GGTTTGCTGGGCGCGGTGCTCGGCTCCACATATCCGGTGGCCTCTGTCCT
CATTAGCGCCTTTGCCGGCGCCCTGCTCTCCGGCGCAGCCATGGCCGTCT
GCGTGGCCACCTTTCCGGACAACGAGTTTGGGTACCGCGAGATCTATGTG
GCCGTGGTGGGTGGAGCCGTCATCTGCTCCGTGCTGACCTTGTGCTGCGT
GAAGTACGTGACCATTCTCACCTCCAGCATTGTGGGCACGGCCATGATCC
TCAGCGCCATCGACTTCTTCACGCACGGTCTGGAGACCATCAATTGGATA
ATCGGCATGCGGCCGCATCCCTCGCCGCCACCTTGCTACGGTGGCCTCCT
GATCGCCGCCTGGCCCGTCACCATTGTGCTCAGCATCATGGTGCAGTGCT
TCATTACCGCCTGGCGCGTGGATCACCGCAAGCGGGTGTACATGCGGCAT
CACAACCATCCTGGCCACGCGCACGGCGCCCATCTGCCGCACAGCCAGCA
GCAGGCGGGACCCATCACGGCATCGCTCCCGTCCGGCGATCCAATCCCGC
ACCCGGGAGACGCGCGAGGAGGCCAGGCAGCCGCAAGTTCCGCTATCTGT
ACAGGTGCGCACGGCCCGTGGTGACATCATATTCGAAGACCTTCTTATCG
GCTCTGCCGAAGCGCATCCAGCTGACGGCACGGAACGCCCGTCGGAGGAT
CGATAAGAGCAGCTCAACGACGAAACACGTTTCGGGACGACCGCACGCCC
TCACTCCATCACGATCCGGATCCGGAGCTGGGGCAAAGAATCGAATGGCC
GGGAATTGGACAAGCTTCCAGAATGCTGGCCCGGGCCAGGAATTGCCCTA
TACTTATACCATATCCAATACATCGTA
FMO03906.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14234-RA | 3638 | CG14234-RA | 420..1529 | 31..1130 | 4895 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19736994..19737361 | 115..482 | 1840 | 100 | Plus |
| X | 23542271 | X | 19737701..19738038 | 647..982 | 1480 | 98.5 | Plus |
| X | 23542271 | X | 19737423..19737588 | 482..647 | 830 | 100 | Plus |
| X | 23542271 | X | 19735989..19736076 | 31..117 | 315 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:15:44 has no hits.
FMO03906.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:12 Download gff for
FMO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 411..1501 | 22..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:48 Download gff for
FMO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 407..1497 | 22..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:32 Download gff for
FMO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14234-RA | 411..1501 | 22..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:32 Download gff for
FMO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19735994..19736075 | 36..116 | 92 | -> | Plus |
| X | 19736996..19737361 | 117..482 | 100 | -> | Plus |
| X | 19737424..19737588 | 483..647 | 100 | -> | Plus |
| X | 19737702..19738043 | 648..988 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:12 Download gff for
FMO03906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19630027..19630108 | 36..116 | 92 | -> | Plus |
| arm_X | 19631029..19631394 | 117..482 | 100 | -> | Plus |
| arm_X | 19631457..19631621 | 483..647 | 100 | -> | Plus |
| arm_X | 19631735..19632076 | 648..988 | 97 | -> | Plus |
