FMO03907.5prime Sequence
525 bp (525 high quality bases) assembled on 2008-07-21
> FMO03907.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGCCGTCAGCT
AAAGTTCCACCTTCAAGCTCCCGACGACGAGGAGTTCGCAGCGGATCTGG
TGGAGATTAACCTGAACCCCAACTGCGGCCAGGTCAAGCAGAAGTCGGCT
CAGGCCTTGGACCAGCTGCTCCTGGCCACGCCCCCACACAGAGGCTATCC
CTACGGCTATGCCGAGGACTCCGAGCCGGATACCTACTTCTGCCGGAAGA
GCAACTCCACAGGCCAACTGGCCGAGAAGGTATCACCTCCGCCGCCCGCT
GCCACCAACATTAGTTGCCTCCGCCAGATGTACTGTCCGGAGTGCCACGA
GCGATTGCACGAGCAGGGAGTCCGCCTGGAGCGACTCCTTACCATGTGCT
GCTTTGCCCTGCTGCCCATCTATCCCTGCTGCCCGAGGCGCTCCACCAAC
GATTGCAAGGTCATCTGCGGCAAGTGTGGTTACCTCTTGGGGGCATGGAA
AAGACAGGCAAGCTTTCTAGACCAT
FMO03907.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43326-RB | 1229 | CG43326-RB | 19..491 | 35..507 | 2365 | 100 | Plus |
| CG43325-RC | 765 | CG43325-RC | 156..628 | 35..507 | 2365 | 100 | Plus |
| CG43325-RB | 628 | CG30217-RB | 19..491 | 35..507 | 2365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22656617..22656980 | 398..35 | 1820 | 100 | Minus |
| 2R | 25286936 | 2R | 22656356..22656465 | 507..398 | 550 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:29:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6466..6506 | 101..61 | 106 | 73.2 | Minus |
FMO03907.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:34 Download gff for
FMO03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43325-RA | 10..491 | 23..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:56 Download gff for
FMO03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30217-RA | 6..487 | 23..507 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:14 Download gff for
FMO03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43325-RB | 10..491 | 23..507 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:14 Download gff for
FMO03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22656356..22656464 | 399..507 | 100 | <- | Minus |
| 2R | 22656617..22656989 | 23..398 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:34 Download gff for
FMO03907.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18543861..18543969 | 399..507 | 100 | <- | Minus |
| arm_2R | 18544122..18544494 | 23..398 | 98 | | Minus |
