FMO03909.5prime Sequence
694 bp (694 high quality bases) assembled on 2008-07-21
> FMO03909.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGGATTTCTACTACTCCC
CTCGAAGCAGTGGATCCCGCACCATTATCATGGTTGCCAAAGCTCTTGGA
CTGGAACTGAACAAAAAGCAACTGCGTATCACAGAAGGGGAACACCTCAA
GCCAGAATTCCTTAAGCTCAATCCCCAGCACACCATTCCCACGCTGGTGG
ACAATGGATTCGCCATTTGGGAGTCCCGTGCCATAGCCGTCTATCTGGTG
GAAAAGTACGGCAAGGACGACTCCCTTTTTCCCAATGATCCCCAGAAACG
CGCATTGATCAATCAGCGATTGTACTTCGATATGGGAACCCTGCATGACT
CCTTTATGAAGTACTATTACCCATTCATCCGTACTGGTCAGCTTGGGAAT
GCCGAGAATTATAAGAAGGTCGAAGCTGCCTTTGAATTCCTGGACATTTT
CTTGGAGGGCCAGGACTACGTGGCTGGTAGCCAGCTAACTGTGGCCGACA
TCGCCATCCTCTCCAGCGTTTCCACTTTCGAAGTGGTTGAGTTTGACATC
AGCAAGTATCCAAATGTGGCACGTTGGTACGCCAATGCCAAAAAGATCAC
ACCCGGATGGGATGAAAACTGGAAGGGTCTGCTACAAATGAAAACAATGT
ACGAAGCCCAAAAGGCCTCATTAAAGGCAAGCTTTCTAGACCAT
FMO03909.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstD4-RA | 725 | CG11512-RA | 52..698 | 30..676 | 3235 | 100 | Plus |
| GstD2-RA | 734 | CG4181-RA | 58..623 | 62..627 | 940 | 78.2 | Plus |
| GstD5-RA | 840 | CG12242-RA | 28..628 | 28..628 | 920 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12374151..12374797 | 30..676 | 3235 | 100 | Plus |
| 3R | 32079331 | 3R | 12372028..12372593 | 62..627 | 940 | 77.7 | Plus |
| 3R | 32079331 | 3R | 12375760..12376360 | 28..628 | 890 | 76.5 | Plus |
| 3R | 32079331 | 3R | 12378672..12379083 | 149..557 | 525 | 75.7 | Plus |
| 3R | 32079331 | 3R | 12373185..12373672 | 135..622 | 490 | 73.4 | Plus |
| 3R | 32079331 | 3R | 12368257..12368457 | 343..143 | 480 | 82.6 | Minus |
| 3R | 32079331 | 3R | 12364952..12365427 | 622..147 | 355 | 71.6 | Minus |
| 3R | 32079331 | 3R | 12380071..12380347 | 67..343 | 320 | 74.4 | Plus |
| 3R | 32079331 | 3R | 12366595..12366777 | 331..149 | 300 | 77.6 | Minus |
| 3R | 32079331 | 3R | 12377316..12377483 | 176..343 | 300 | 78.6 | Plus |
| 3R | 32079331 | 3R | 12367978..12368187 | 622..413 | 225 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:10 has no hits.
FMO03909.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:35 Download gff for
FMO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 45..701 | 24..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:49 Download gff for
FMO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 45..701 | 24..683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:18 Download gff for
FMO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstD4-RA | 47..703 | 24..683 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:18 Download gff for
FMO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12374146..12374802 | 24..683 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:35 Download gff for
FMO03909.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8199868..8200524 | 24..683 | 99 | | Plus |
