FMO03910.5prime Sequence
887 bp (727 high quality bases) assembled on 2008-07-21
> FMO03910.5prime
ATAAAAAAAAAGGAAGTTATCAGTCGACATGAGGGGTCTTACACTCTCGT
CGATCGCCTTCCTTGGGGTCTGTAGTGCCCTAACTGTGCCCCATTCGCTG
GTCCATCCACGCGATCTGGAGATTCGTCATGGAGGGATTGAGGGTCGTAT
TACCAACGGAAACCTGGCGTCCGAGGGTCAGGTTCCCTACATCGTGGGTG
TGAGCTTGAACAGCAACGGAAACTGGTGGTGGTGCGGCGGATCCATAATC
GGACACACTTGGGTGCTCACTGCTGCCCACTGTACCGCTGGTGCTGATGA
GGCTTCACTGTACTATGGTGCCGTCAACTACAACGAACCTGCCTTCCGCC
ACACAGTGAGCAGCGAGAACTTCATCAGATATCCCCACTACGTTGGACTC
GATCATGATTTGGCCCTGATCAAGACTCCCCATGTGGACTTCTACAGCCT
GGTCAACAAAATAGAGCTTCCCAGCCTGGATGACCGATACAACTCTTACG
AAAACAATTGGGTTCAGGCCGCCGGATGGGGTGCCATTTACGATGGCAGC
AATGTGGTGGAGGATCTGCGAGTGGTGGATCTGAAAGTGATCTCCGTGGC
GGAGTGCCAGGCTTACTACGGAACTGATACCGCCTCCGAGAACACCATCT
GTGTGGAAACTCCGGACGGAAAGGCCACCTGCCAGGGTGATTCTGGTGGT
CCTCTGGTCACAAGGAAGGTGATAAGCTTATCGGATCCCTTCCTTCTTCT
CCGCTTACGGATGCCCATGTTGGAGGACCCGGCTGGCTTCTCTAGGGTCA
CCAAGTACCTGTAATGGATAAAGGGAGGAGACTGGAATCTATTATGCAAG
CTTTCAGACCATTCGTTTGGGCGCGCGGGTCAGGTAA
FMO03910.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon99Ci-RA | 907 | CG31039-RA | 16..831 | 29..845 | 3850 | 98.4 | Plus |
| Jon25Bii-RB | 894 | CG8869-RB | 136..286 | 136..286 | 260 | 78.9 | Plus |
| Jon25Bii-RA | 884 | CG8869-RA | 136..286 | 136..286 | 260 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29925302..29925855 | 845..291 | 2445 | 98 | Minus |
| 3R | 32079331 | 3R | 29925912..29926174 | 291..29 | 1285 | 99.2 | Minus |
| 2L | 23513712 | 2L | 4952851..4953001 | 286..136 | 260 | 78.1 | Minus |
| 3R | 32079331 | 3R | 30489091..30489233 | 141..286 | 230 | 78.8 | Plus |
| 3R | 32079331 | 3R | 29924348..29924494 | 286..137 | 220 | 78 | Minus |
| 3R | 32079331 | 3R | 29922335..29922429 | 137..231 | 190 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:34:11 has no hits.
FMO03910.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:19 Download gff for
FMO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 7..834 | 20..849 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:57 Download gff for
FMO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 3..830 | 20..849 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:51 Download gff for
FMO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon99Ci-RA | 7..834 | 20..849 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:51 Download gff for
FMO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29925298..29925854 | 292..849 | 97 | <- | Minus |
| 3R | 29925912..29926191 | 11..291 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:19 Download gff for
FMO03910.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25751020..25751576 | 292..849 | 97 | <- | Minus |
| arm_3R | 25751634..25751913 | 11..291 | 95 | <- | Minus |
