FMO03912.5prime Sequence
1123 bp (1039 high quality bases) assembled on 2008-07-21
> FMO03912.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGCAAATGGA
AGTGGACGTTGACATGTCGGCCAAGCCCAGCACATCGTCCTCCGCCGCCG
CCGGGAGCAGTATGGCAGTGGATAAGACTGCGGATCAAAACCCACAGCCG
CAGGGAAACATAATGGCTGCAGCGGGCACCAGTGGTTCTGTGACCATATC
GCTGCATCCGCTGGTCATAATGAACATCTCCGAGCACTGGACACGCTTTC
GTGCACAGCACGGTGAGCCGCGACAGGTGTACGGAGCACTGATTGGCAAG
CAGAAGGGCCGCAACATTGAGATTATGAACTCGTTCGAACTGAAGACGGA
CGTTATTGGCGATGAAACAGTGATCAACAAGGACTACTACAACAAGAAGG
AACAACAGTACAAGCAGGTGTTCAGTGATCTCGACTTCATAGGCTGGTAC
ACAACCGGCGACAATCCCACTGCCGATGACATTAAGATCCAAAGACAGAT
AGCCGCCATCAACGAGTGCCCCATCATGCTACAGCTGAATCCGCTCTCCC
GCAGCGTCGACCACCTTCCCCTGAAGCTATTCGAGTCCCTAATCGATCTG
GTGGACGGCGAGGCCACCATGCTGTTCGTGCCCCTCACCTACACACTGGC
CACCGAGGAGGCGGAGCGCATTGGTGTGGATCATGTGGCGCGCATGACCT
CGAACGAGTCCGGCGAGAAGAGCGTGGTGGCGGAGCATTTGGTGGCCCAG
GACAGTGCCATTAAGATGCTAAATACACGCATCAAGATCGTGCTGCAGTA
CATACGCGATGTGGAGGCCGGAAAGCTGCGGGCCAACCAAGAGATTCTGC
GAGAAGCCTACGCTCTCTGCCACCGACTGCCCGTCATGCAGGTGCCCGCC
TTCCAGGAGGAATTCTACACGCAGTGCAACGATGTGGGGACTGATTAGCT
ACCTGGGCACGCTGACCAGGGCTGCAATGATATTGCACCACTTTGTGAAC
AGTTTAATATGCTGTACGACGCAGGGATCGCGCGCGCATGCAAGTCTCTA
CTATGCAAGCTTTCTAGACCATCGTTGGCGCCGCGGCCCAGGTAGTGTCT
AATCATATCATATCTAATCTAAT
FMO03912.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN6-RA | 1203 | CG6932-RA | 122..1145 | 36..1054 | 4890 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22581331..22581936 | 415..1020 | 2840 | 99.3 | Plus |
| 3R | 32079331 | 3R | 22580894..22581278 | 36..420 | 1925 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:34 has no hits.
FMO03912.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:48 Download gff for
FMO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1134 | 36..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:15 Download gff for
FMO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 120..1132 | 36..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:05 Download gff for
FMO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN6-RA | 122..1134 | 36..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:05 Download gff for
FMO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22580894..22581275 | 36..417 | 100 | -> | Plus |
| 3R | 22581334..22581964 | 418..1044 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:48 Download gff for
FMO03912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18406616..18406997 | 36..417 | 100 | -> | Plus |
| arm_3R | 18407056..18407686 | 418..1044 | 98 | | Plus |
