Clone FMO03913 Report

Search the DGRC for FMO03913

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:13
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13216-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03913.5prime Sequence

693 bp (461 high quality bases) assembled on 2008-07-21

> FMO03913.5prime
TAATACGAAGTTATCAGTCGACATGACCAAGTTCGTTGCGACCAAAGCTA
TCCTGCTGCTCTCCCTGCTCCTTCTGGGCACGGCGGAGTCAAAGCCACTG
GATGCGGAACAGCAGCATATCGATGATCAGCATGTGCGAAAGGAGCGTCA
GCTGAAGATGGCCGGTTCTGCGGATCCAGACGTTAAAATGGTGGCCAACG
TGACTCCAGCGACGGGATCTCAACCAATGTCGATGACCATGGGTGTGCCA
ATGAACCAGATGGCCCTGAGCTCGGTCGGTGGCCAGTTGGTGCGGTATCC
CAACTACCCGGGTCTGATCTATCCTGGCCTTGCGCCGGCACCTGGCCTAA
ATGGTGTTCCCGGTCTGCATACGAACATTGCCAACAACTATCCCTCGTAT
CCGGATCCCAATCTGACTGGTTCAGTTCCTGGCTTCAATCCCTTTGGCTC
ATTCGGCTACCCAGGCGTGGCACCCATGTATGGAAACTCCCTGATGTATC
CCAACCCCCAGCTGCCTAATGGATTTGTGCCCAATCCAGCCGTAGATAAC
TTTCAATCGCTGAACAATATTGTCAATATGGCCAATGTTCAGGGATTGGC
TGGCGGCAGTTCCGGAATATATCCAGCACCTCAAGGATTCGGTGGCGTTA
CCCCGGGTCTATATCCCGCTCCGCAGGGATTCGGTGGAGCCAA

FMO03913.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13216-RA 888 CG13216-RA 29..703 19..693 3285 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11238293..11238967 693..19 3285 99.1 Minus
Blast to na_te.dros performed on 2014-11-28 22:30:49 has no hits.

FMO03913.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:49 Download gff for FMO03913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13216-RA 29..701 19..691 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:51 Download gff for FMO03913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13216-RA 28..700 19..691 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:42 Download gff for FMO03913.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13216-RA 29..701 19..691 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:42 Download gff for FMO03913.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11238295..11238967 19..691 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:49 Download gff for FMO03913.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7125800..7126472 19..691 99   Minus