FMO03916.5prime Sequence
640 bp (640 high quality bases) assembled on 2008-07-21
> FMO03916.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGCATTCCAGTTGTGTGT
TAGTGGTCCTCATGGCCCTGGCTGCCCTGGTGGCCGCTCGTCCAGAGCCG
CCTCGTGACTCGTACAGTGCGCCCCCCTCCAGCAGCTACCAGCCAAGTGG
ACCCAGCGGAGGCTACGGCGCCCCTGCGCCCCAGTACGGACCTCCCCAGC
AGGCGCCGGTGATTCACAAGCACGTCTACGTCCATGTACCTCCACCAGAG
CCGGAATACCAGGCACCCAGGAAACCCCTTTACGTGCCACCTCCGCAGAA
GCACTACAAGATCGTCTTCATCAAGGCGCCATCTCCACCAGTACCGACCG
CCCCTGTAATACCGCAGTTCCCACAGAACGAAGAGAAGACCCTGGTGTAC
GTGCTAGTCAAGAAGCCGGAGGAGCAGCCGGAGATCATTATCCCAACGCC
AGCTCCCACCCAACCCAGCAAGCCGGAGGTGTACTTCATCCGCTACAAGA
CCCAGAAGGAGGAGACCGGACCCTATCCCAACAGTGTGGCGCCTCCAGCG
CCCGAGTACGGAGCTCCAGCTGCCCCGCCCGCACCCTCTGCTCCCAGCAG
CTCGTATGGGGCACCATCCCACGCAAGCTTTCTAGACCAT
FMO03916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlE-RA | 1346 | CG14534-RA | 140..730 | 32..622 | 2955 | 100 | Plus |
| lectin-28C-RC | 3044 | CG7106-RC | 1497..1853 | 622..266 | 1785 | 100 | Minus |
| TwdlT-RA | 1607 | CG5812-RA | 665..879 | 296..510 | 410 | 80.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7858573..7858929 | 622..266 | 1785 | 100 | Minus |
| 2L | 23513712 | 2L | 7860380..7860602 | 271..49 | 1115 | 100 | Minus |
| 3R | 32079331 | 3R | 27050062..27050276 | 296..510 | 370 | 78.1 | Plus |
| 2R | 25286936 | 2R | 11862730..11862834 | 490..386 | 180 | 78.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:51 has no hits.
FMO03916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:00 Download gff for
FMO03916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlE-RA | 131..735 | 24..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:59 Download gff for
FMO03916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlE-RA | 130..734 | 24..628 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:15 Download gff for
FMO03916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlE-RA | 131..735 | 24..628 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:15 Download gff for
FMO03916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7858568..7858924 | 271..628 | 99 | <- | Minus |
| 2L | 7860381..7860601 | 50..270 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:00 Download gff for
FMO03916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7858568..7858924 | 271..628 | 99 | <- | Minus |
| arm_2L | 7860381..7860601 | 50..270 | 100 | <- | Minus |
