FMO03921.5prime Sequence
1256 bp (42 high quality bases) assembled on 2008-07-21
> FMO03921.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCCACATGCTAAACAACAA
GCTGAACGAGAACGACCTTCGCAAGCTATTTGAATTCCACGGAGCCATCG
AGGAGTGCACCGTCCTTCGGGACCAAAACGGACAGAGCAAGGGTTGTGCC
TTCGTCACATTCGCCACCAAGCACGCTGCCATTTCGGCCATTAAAGTGAC
CCTGAGCCAGAACAAGATCATGGAGGGCTGCACATCGCCGCTGGTCGTCA
AGTTCGCCGATACGCAAAAAGAGAAGGAGCATAAAAACATTCAACGAATT
CAAGCCAATCTCTGGAACCTGGACAGCAACATCAACATACCTCTGGGCCT
AACGGCCACCAGCGTGACCACGCCCATCCTGCCCAATCCGCCGCACCAGC
CTTCGCCGGTTCTCGGCGCACATGCCATTACCCCGGCCTCCATTCAACTG
CTGCAACACCTGCAGGCGGTGGGACTGCAGCACCAGTTGTTGCAAGCCCT
CACAGGACTGGGAGCCCAGCTCAGCAGCTCGGCGACGGACACCAGCGCTG
TGGCGGCCGCAGGACTTTTGACCCCGATGACCGTCCAGAATCTAGCGGCC
ATTGCGGCCATGACGCATGCGAGTCTCTCGAATGCCGCCGCGGCAGCCGC
CGCTGCCACATCACCTGAAAGCGCCGAACTGACCAACACGGCTGCTCTGC
TCTGGTCCGATCCGAATCGAGTGGCATCGGCATATATGTCAACAGCCGCC
GGTCTGCCGCAATTCAGGAGCGCCAGTGGATTGTCCACTTCTCCGCTGGC
CAGCGTTGCCCTCAGCGCCCCAGCCGCCGCCGCAACGAAAAACAGATTGA
AGGACCCTAGGGCTGTACCTTTTCATCTACCATCTGCCGCAGGAGTCACC
GATACAGATTTGCGCCTCCACGTTCCTGCCTTTCGGAAATGTGATCTCGG
CCAAGGAGTTCATCGACAACTTACCAGCCTGTCGAAGTGCTTCGGGTTTG
TCTCATCAACAATCCGGACTCGGGCCATGTGGACATAAAGGCGAATGAAC
TGGGTCTAAGTTGGGCACCAAGCGGCTCATAGGTGACAGCTGAGGAAGCC
CAAAGGAATCAAAAGCACTACGAAAGCTTTCTAGAAACCTTTCGTTGGGC
GCGCGGGGCCAGGTAAGTTGGCAAAATCTAATCTATCAAATCTTACAATG
CAAGCTAGCCTTAAGAAAATTCTGTGCCGGAGAGTAAGGATATGTGAGAT
ATTCTA
FMO03921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| aret-RK | 3510 | CG31762-RK | 1064..2130 | 37..1103 | 4300 | 94 | Plus |
| aret-RJ | 2431 | CG31762-RJ | 1093..2159 | 37..1103 | 4300 | 94 | Plus |
| aret-RI | 3019 | CG31762-RI | 788..1854 | 37..1103 | 4300 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12298813..12299111 | 198..496 | 1315 | 96 | Plus |
| 2L | 23513712 | 2L | 12299186..12299395 | 495..704 | 930 | 96.2 | Plus |
| 2L | 23513712 | 2L | 12298588..12298749 | 37..198 | 765 | 98.1 | Plus |
| 2L | 23513712 | 2L | 12304446..12304596 | 704..853 | 570 | 93.4 | Plus |
| 2L | 23513712 | 2L | 12310680..12310876 | 851..1044 | 515 | 89.9 | Plus |
| 2L | 23513712 | 2L | 12385632..12385718 | 87..173 | 240 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:18 has no hits.
FMO03921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:20 Download gff for
FMO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 788..1865 | 37..1116 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:54 Download gff for
FMO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RA | 1059..2136 | 37..1116 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:22 Download gff for
FMO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| aret-RI | 788..1865 | 37..1116 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:22 Download gff for
FMO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12298588..12298749 | 37..198 | 98 | -> | Plus |
| 2L | 12298814..12299111 | 199..496 | 95 | -> | Plus |
| 2L | 12299188..12299394 | 497..703 | 96 | -> | Plus |
| 2L | 12304446..12304595 | 704..852 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:20 Download gff for
FMO03921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12298588..12298749 | 37..198 | 98 | -> | Plus |
| arm_2L | 12298814..12299111 | 199..496 | 95 | -> | Plus |
| arm_2L | 12299188..12299394 | 497..703 | 96 | -> | Plus |
| arm_2L | 12304446..12304595 | 704..852 | 93 | -> | Plus |
