FMO03922.5prime Sequence
1184 bp (1047 high quality bases) assembled on 2008-07-21
> FMO03922.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGCATCTCC
GGGGTTTGGGGCGACTGCTGATCGCCGTGACCTTCTTCACATGCGGATTC
TTCGTCAACATTGGCCAGCTCCTGCTGATTCTCCTCGTGAGGCCCTTCGA
TAAGAAGCTATCCCGCAGTCTGGCCTACTACCTGCACTACTCCTTCTATT
GCATCCTTGTCTGTGTGGCGGAATGGTATGCGGGCAGCAAGCTGAGGGTG
TACATCGATCCCCAGGACGAGCAGAAGTTCTTCGGCAAGGAGCATGGACT
GCTCCTGATGAACCACACGTACGAGATCGACTGGCTGACCGCCTGGATGA
TCACCGACAAGCTGGGCAATCTGGGAGGCACCAAGGCGTATGCCAAGAAG
ATGCTGCGCTATGTTCCGGTCCTGGGATGGGTCTGGTGGATGGCCGAGTT
CATCTTCCTTGACCGCAACTTCGAGAAGGACAAGGTGGTGATCAAGACGC
AGCTGAAGGAGGTCTTCTCCTATCCGGATCCCGTGTGGCTACTGCTGAAC
GCGGAGGGCACCCGTTTCACACCCGCCAAACACGAGCTGTCAGTCAAGTT
CGCCGAGGAGCGAGGTCTTCCCCTCCTCAAGCACCATCTGATTCCGCGCA
CTAAGGGATTCACGACCAGTCTGCCCACCATGCGTGGCATCTGTCCTGCC
ATCTACGACATCAATCTGGCCTTCAAGAAGAATGCCGAGCCAAAGCCCAC
CATGCTGTCCCAGTTGAACGGAGAGCCCGTGGAACCGTACATGTACATTC
GCCGAGTGCCACTGGACGTGGTTCCCGATGACGAGAAGGAGGCCGCCGCC
TGGATGCAGGACTTCTTTGCGGAAAAGGACAAGATCATCGACAGCTTCCA
CGAGACCGGCAGCTTCTTTAAGAATTCCGGAGTCAAGGAGTGCCCGAGAA
ATCTACAAGCCGCGCCTGAGCACGCTCCTCAACTTCTTGGGCTGGGCCAC
CTTTGCCGTCCTGTGCATTCTGCACTACTTGATCACCTCGCTGTTGCCGG
CAACTGGTTTGGCCTCATCACGTCTTTCCATTTTGGGAGATTCTATAGCC
TCATGATACGCTGGATGCTTCCGAAGAATCAGCAGCTCTGCGATGGAGAC
ACTGCCTGCAGAAGCAGCTTCTGAACAATTCGTG
FMO03922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4753-RC | 1575 | CG4753-RC | 280..1384 | 38..1134 | 5225 | 98.7 | Plus |
| CG4753-RA | 1355 | CG4753-RA | 60..1164 | 38..1134 | 5225 | 98.7 | Plus |
| CG4753-RB | 1570 | CG4753-RB | 275..1379 | 38..1134 | 5225 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16379700..16380235 | 739..204 | 2680 | 100 | Minus |
| 3L | 28110227 | 3L | 16379273..16379629 | 1089..738 | 1540 | 98 | Minus |
| 3L | 28110227 | 3L | 16380471..16380636 | 203..38 | 830 | 100 | Minus |
| 3L | 28110227 | 3L | 16383353..16383787 | 717..283 | 540 | 74.9 | Minus |
| 3L | 28110227 | 3L | 16382539..16382670 | 940..809 | 315 | 82.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:48 has no hits.
FMO03922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:55 Download gff for
FMO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1373 | 30..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:46 Download gff for
FMO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RA | 55..1153 | 38..1127 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:59 Download gff for
FMO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4753-RB | 271..1373 | 30..1127 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:59 Download gff for
FMO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16379273..16379627 | 740..1089 | 98 | <- | Minus |
| 3L | 16379700..16380235 | 204..739 | 100 | <- | Minus |
| 3L | 16380471..16380636 | 38..203 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:55 Download gff for
FMO03922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16372373..16372727 | 740..1089 | 98 | <- | Minus |
| arm_3L | 16372800..16373335 | 204..739 | 100 | <- | Minus |
| arm_3L | 16373571..16373736 | 38..203 | 100 | | Minus |
