FMO03924.5prime Sequence
518 bp (518 high quality bases) assembled on 2008-07-21
> FMO03924.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATAACAAGAGC
GAGAAGGTTACGGTGAACAAGGAGGAGCTGCGCAAGCGCCTGACCCCGGT
GCAGTATCAGGTTACCCAGGAGGCGGGCACCGAGCGACCCTTCACAGGTT
GCTACAACAAACACTACGAGAAGGGCGTGTACCAGTGCATCGTGTGCCAC
CAGGATCTGTTCAGCTCGGAGACCAAGTACGACTCGGGATGCGGATGGCC
GGCCTTCAACGATGTCCTAGACAAGGGCAAGGTCACGCTGCACCGCGATG
CCAGCATACCAGAACGTATACGCACTGAGGTCCGCTGCGCCCGCTGCAAC
GCCCACATGGGTCACGTCTTCGAGGATGGTCCGAAGCCGACCCGCAAGCG
CTACTGCATCAATTCCGCCTCCATTGAGTTCGTGAACGCGGATCCCGCCA
CCTCGTCCCCGCCCGTGGCCACGCCCACCGCGGCGCCCATTGCCCAGCAG
GCAAGCTTTCTAGACCAT
FMO03924.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SelR-RI | 992 | CG6584-RI | 245..709 | 36..500 | 2325 | 100 | Plus |
| SelR-RC | 1123 | CG6584-RC | 376..840 | 36..500 | 2325 | 100 | Plus |
| SelR-RA | 1008 | CG6584-RA | 261..725 | 36..500 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10863638..10863829 | 500..309 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 10866529..10866698 | 312..143 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 10866807..10866920 | 149..36 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:19 has no hits.
FMO03924.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:30 Download gff for
FMO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 28..506 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:45 Download gff for
FMO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RI | 252..730 | 28..506 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:17 Download gff for
FMO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SelR-RA | 253..731 | 28..506 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:17 Download gff for
FMO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10863632..10863825 | 313..506 | 98 | <- | Minus |
| 3R | 10866529..10866693 | 148..312 | 100 | <- | Minus |
| 3R | 10866809..10866928 | 28..147 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:30 Download gff for
FMO03924.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6689354..6689547 | 313..506 | 98 | <- | Minus |
| arm_3R | 6692251..6692415 | 148..312 | 100 | <- | Minus |
| arm_3R | 6692531..6692650 | 28..147 | 98 | | Minus |
