FMO03925.5prime Sequence
1224 bp (1075 high quality bases) assembled on 2008-07-21
> FMO03925.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGAAAACAG
TGGTAGTTACTCACCCAGGAAAACCGATAAATAACGAGAAAAGATTTCGC
TTCGAGCTTCTCTATTTCTGTGTGATTCTTCTAATGGTTGTGGGTTTAGC
AGCTGGCTATTTCATGTGGATGATGTCCTTCTCCACACATTCGCCGAACA
AGGGCCTACACATACTCGATCGCAGCGAATGGCTGGGGGAACCACCCAGT
GGGAAGTACCCGCACCTTAAGCTTCCCGTCTCCAATATTATCATTCATCA
CACGGCAACCGAAGGATGCGAACAAGAGGATGTTTGCATATACCGCATGA
AGACCATTCAGGCGTTCCATATGAAATCTTTTGGTTGGGTCGACATTGGC
TATAACTTTTTGGTGGGCGGCGATGGTCAAATATACGTAGGACGCGGCTG
GCACATCCAGGGTCAGCATGTGAATGGATATGGTGCCATCTCCGTTAGCA
TAGCCTTTATCGGAACTTTTGTGAATATGGAGCCACCAGCTCGACAAATC
GAAGCAGCCAAGCGACTGATGGACGAGGGCGTACGTCTCCATAGATTGCA
ACCGGATTATCATATATATGCCCATCGACAATTAAGCCCCACCGAAAGTC
CTGGCCAGAAGCTTTTCGAGCTGATGCAAAATTGGCCCCGATTCACGCAG
GATCCAACATCATTGCGACTCCTAAGCAATGAGACTGTAAAGATCGTTAC
CCGACCCTATTGGTTGGCCCAGCCACCTATAGTGCCACTTACTCCTTTGA
AGCTGCCAATTGAGAGCGTGAGATTTGTGGCAACCAACACGCCATCATGT
TTCACTCAAGCCGAGTGCACTTTTCGAGTGCGCCTTCTGCAAAATTGGCA
CATCGAGAGCAATGGATATAAGGATATTAACTATAATTTCGTTGCGGCTG
GGGACGAAAACATCTACGAGCCAGGAGGTTGGGATCACAGCTGTGAACCT
CCAAGATGCAGATGACTAGTCGTGGCCTTATGTCCATCGAGTAGCAATAA
AAAGATAGCATTAGACTATCAACAGGCATAACCTGTCTATTAGCAGAACT
ATAGTCTATGACGAATTAGAAAGTCAGCAGCCTTCTGACATTCCGTGCGC
CGCGCCAGCTAATGCCTAACTTGAGTCGTATCTATCCTAAGCCACACATT
GCCATAGGGAGAACTCCGCTGCTC
FMO03925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-LF-RA | 1355 | CG4437-RA | 78..1179 | 38..1122 | 5035 | 98 | Plus |
| UGP-RE | 2686 | CG4347-RE | 2240..2669 | 1122..710 | 1660 | 94.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9350442..9350828 | 327..713 | 1935 | 100 | Plus |
| 3L | 28110227 | 3L | 9350884..9351245 | 710..1065 | 1525 | 96.7 | Plus |
| 3L | 28110227 | 3L | 9349896..9350048 | 177..329 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9349686..9349824 | 38..176 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:16 has no hits.
FMO03925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:20 Download gff for
FMO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 70..1184 | 28..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:58 Download gff for
FMO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 68..1182 | 28..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:15 Download gff for
FMO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-LF-RA | 70..1184 | 28..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:15 Download gff for
FMO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9349680..9349824 | 32..176 | 97 | -> | Plus |
| 3L | 9349896..9350047 | 177..328 | 100 | -> | Plus |
| 3L | 9350444..9350828 | 329..713 | 100 | -> | Plus |
| 3L | 9350888..9351318 | 714..1126 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:20 Download gff for
FMO03925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9342780..9342924 | 32..176 | 97 | -> | Plus |
| arm_3L | 9342996..9343147 | 177..328 | 100 | -> | Plus |
| arm_3L | 9343544..9343928 | 329..713 | 100 | -> | Plus |
| arm_3L | 9343988..9344418 | 714..1126 | 94 | | Plus |
