FMO03926.5prime Sequence
1234 bp (1067 high quality bases) assembled on 2008-07-21
> FMO03926.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCATCAAGT
GCGTCCACCTGGTGGGCCTTCTGGTCCTGCTAATGGGCGGGGCCAACGCC
CTTTTCGATCACACACTGAAAAGGGACTTCCCAGGTCCTTACTGCGCACG
GGAGAACACCTGCTGCAAGGATCGGCACGACGGCTGCTCGGTGCCCATCT
CCAACACTCTATGCTACTGCGATGAGTTCTGCGATCGGGACGACTCCAGC
GACTGCTGTCCCGACTACCGCTCCTTCTGCATCGGCGAGGTGGACCCAAT
CATCTCCTGCGAGCACAACGGCGTCTACTTCAGCAAGTACAATACCACGT
GGGACAACTGCAACGAGTGCCGCTGCCTGGAGGGCGGCAGCGTGCAGTGC
GACGAGGATCTGTGCCTCACCGACGACGCGATTGTGCACAGCGTGAACTC
GATTCACAGACTGGGCTGGTCTGCCCGCAAGTATGACCAGTGGTGGGGTC
GCAAGTACTCCGAGGGACTAAAGCTGCGTCTGGGCACCAAGGAGCCCACG
TACCGCGTGAAGGCGATGACGCGTCTAAAGAATCCCACCGATGGCCTGCC
CAGCTCCTTCAACGCACTGGACAAGTGGTCCAGCTACATCTCCGAGGTGC
CCGACCAGGGCTGGTGCGGTGCCTCATGGGTGCTGTCCACCACCTCGGTG
GCCAGCGATCGCTTCGCCATCCAGAGCAAGGGCAAGGAGAATGTCCAGCT
GTCCGCCCAGAACATCCTCTCCTGCACACGCCGCCAGCAGGGCTGCGAGG
GTGGCCACTTGGACGCCGCCTGGCGCTACTTGCACAAGAAGGGCGTGGTC
GACGAGAACTGCTATCCGTACACACAGCACCGCGACACCTGCAAGATCCG
CCACAACAGTCGCTCTCTGAGGGCCAATGGATGCCAAAAGCCGGTCAATG
GGGACAGGGACTCCCTCTACACGGTGGGGTCCGGCCTACAGCTTGAACGG
GAAGCCGACATTATGGGCCGAGATCTTCACTCCGGGTCCCGTACAGGCCA
CCATGGCGGGTTACAGGGACTCTCGCCTACTCAGGCGGGTGTGTTACCGC
GAGACAGCAGCAACGGAAGGCGGCCAACTGGGGCTCCACTCGGTGAGTGG
TGGCTGGGGGAAAGGGAACCATGGGGAAAGATTGTATCCCACGAACCTGT
GGGATCTGGGTGGGGGCGCAGAACAGTGGCTAAC
FMO03926.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Swim-RA | 1989 | CG3074-RA | 150..1334 | 37..1215 | 5190 | 97 | Plus |
| Swim-RB | 2049 | CG3074-RB | 210..1394 | 37..1215 | 5190 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22190626..22191567 | 1146..204 | 4080 | 97.4 | Minus |
| 2R | 25286936 | 2R | 22191662..22191828 | 203..37 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:50 has no hits.
FMO03926.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:19 Download gff for
FMO03926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 205..1339 | 31..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:46 Download gff for
FMO03926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3074-RB | 207..1341 | 31..1165 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:48 Download gff for
FMO03926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Swim-RB | 205..1339 | 31..1165 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:48 Download gff for
FMO03926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22191662..22191831 | 31..203 | 98 | | Minus |
| 2R | 22190651..22191567 | 204..1119 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:19 Download gff for
FMO03926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18078156..18079072 | 204..1119 | 98 | <- | Minus |
| arm_2R | 18079167..18079336 | 31..203 | 98 | | Minus |
