Clone FMO03927 Report

Search the DGRC for FMO03927

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30197-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03927.5prime Sequence

391 bp (391 high quality bases) assembled on 2008-07-21

> FMO03927.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTAAGCTCGGCT
TTCTTTCACTGTTAATTGCTGCCTGTGTGGTTGCTGCCTTTGCTGCGGGT
GATTGTCCTTCATCCACCAAGGTTCAGAACTGTACGCCAAAATGCCTGCA
TGACAGCGAGTGCAGCGCCATCGGCGGAAAATGCTGTCCGAATTTGTGCA
ACGGTCGCAGTTGTGCTCAACCGAATGTCCTGGGAAATTCTGGAGCCGAT
AAATCGCCCTTCGGCAGCAAGAACTCTGGAGCTACTGGCAGTTATTGCGG
CAATGTCAAGTGCGGCAGCTTTGAGAAATGCGAAATGGATCGCAGCACCA
AGCGACCCAAGTGCGTGAGATCGGCAAGCTTTCTAGACCAT

FMO03927.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30197-RA 481 CG30197-RA 51..390 34..373 1700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14514282..14514456 101..275 875 100 Plus
2R 25286936 2R 14514804..14514901 276..373 490 100 Plus
2R 25286936 2R 14514152..14514215 38..101 320 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:06:30 has no hits.

FMO03927.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:42 Download gff for FMO03927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30197-RA 41..390 24..377 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:02 Download gff for FMO03927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30197-RA 41..390 24..377 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:22 Download gff for FMO03927.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30197-RA 45..394 24..377 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:22 Download gff for FMO03927.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14514153..14514215 39..101 100 -> Plus
2R 14514283..14514456 102..275 100 -> Plus
2R 14514804..14514905 276..377 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:42 Download gff for FMO03927.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10401658..10401720 39..101 100 -> Plus
arm_2R 10401788..10401961 102..275 100 -> Plus
arm_2R 10402309..10402410 276..377 98   Plus