FMO03930.5prime Sequence
708 bp (708 high quality bases) assembled on 2008-07-21
> FMO03930.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCTGCTCCAC
AAACGTTTTGAAGGGCTTTGCCCTCTTTTGGGATATTATCCTCGCTCTGT
TCGGCCTGGTTGTTATCGGCCTTGGTGTGCACATCATCTACAAATTCGAG
CACTTCAACACGGCCGCCTTCGTCATCATCGCGGTGGGCGTGGTCGTCGT
TCTGACCGCCCTTTTCGGGGCTCTGGGAGCAGCGCGGGAGAGCAGTGCCA
CATCTAAGGTGTTCGTTGTTATTCTGATTGTCTTGGTCATACTGGAAGTT
CTAGCAGTTGGGTTCCTGTGGGTTTTCCAAACCTCGCTGCTGATTAACGT
GGACAAAACGTTTGATAAACTGTGGAATGACCAGCCGGTGCCAATCAAGC
CTGGCAACCAGAGTCAGATTGCCAGCCTCGAGCGATGGTTGGATTGCTGC
GGCAATGTGGGGCCCTCGGACTACATTCTGCCCCCGAATAGTTGCTACAA
CGGCGAGAGTGACAAACTGAATCTTGAAGGATGCCGGCAAAAGTTCCTGG
ACTTTATCGCCGATCGTTGGACGACATTTAATCTGGTTTCCCTGGTGCTA
TTGGGTGTGGAGCTGATTTGCGCCCTGTTGGCCTATGTCCTGGCCGATAG
CATCGTGAACCGCTGGCGACGCTCGAAGTACTATCAGAAAGCAAGCTTTC
TAGACCAT
FMO03930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp42Eg-RA | 1188 | CG12142-RA | 189..842 | 37..690 | 3240 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7032571..7032745 | 438..612 | 875 | 100 | Plus |
| 2R | 25286936 | 2R | 7032326..7032503 | 261..438 | 875 | 99.4 | Plus |
| 2R | 25286936 | 2R | 7031748..7031912 | 97..261 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 7032808..7032887 | 611..690 | 385 | 98.8 | Plus |
| 2R | 25286936 | 2R | 7029099..7029158 | 37..96 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:54 has no hits.
FMO03930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:21 Download gff for
FMO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Eg-RA | 189..848 | 37..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:04 Download gff for
FMO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Eg-RA | 187..846 | 37..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:08 Download gff for
FMO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp42Eg-RA | 189..848 | 37..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:08 Download gff for
FMO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7029099..7029158 | 37..96 | 100 | -> | Plus |
| 2R | 7031748..7031912 | 97..261 | 100 | -> | Plus |
| 2R | 7032327..7032503 | 262..438 | 99 | -> | Plus |
| 2R | 7032572..7032745 | 439..612 | 100 | -> | Plus |
| 2R | 7032810..7032893 | 613..698 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:21 Download gff for
FMO03930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2916604..2916663 | 37..96 | 100 | -> | Plus |
| arm_2R | 2919253..2919417 | 97..261 | 100 | -> | Plus |
| arm_2R | 2919832..2920008 | 262..438 | 99 | -> | Plus |
| arm_2R | 2920077..2920250 | 439..612 | 100 | -> | Plus |
| arm_2R | 2920315..2920398 | 613..698 | 94 | | Plus |
