FMO03932.5prime Sequence
1233 bp (991 high quality bases) assembled on 2008-07-21
> FMO03932.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGCAGCGCGTCATG
CCGGCGTCCTGGAGCAGCGGGGGCAGCCTGCTGCCCTTTCGCGTTTCCAC
CACCACAAAGGTTGTGCTCTTCTCACTGACCGCCGGCGTGGCCCTAATGA
GCGTACTCTCCCGATTTCTGCGACGTCGCAAGCCACCGCGTCCGCCTCGT
CGAGCCAGGAAGTACACGGGTCGGCGCAACCGCAACAGCATGCGCAGTCC
AAACGATCTAATCTCGATAGCCGGATCTAAGGCCTCGGCCAGATCGGGGA
GTCCTGTGGGCTCCACACTGGCCTACTCGGATCGCCTGTCCATGGCGTCC
GGCTCGATTGGCGTTGGTGTATTGGGCGTACAAAATGCCGGTCCTGGCAG
CTCGGTAGTCACACAACTGACGGCCCAACAGTTGGGCATGATGGGCATGG
AGGCACTGGACACAGTGATCAACTTCTGGGAGGATGCCCTGGCGGCACAC
TACTCGCCCGGCGGTTTGCCCGCCCTGTTGACCACGGCGGAGGACTCCGA
GTTCTGTCGCGAGATCCAAAACCTGCTGGAGATGGCCTACACGCTGCAGG
AGCAGAGCGAACTGCTCTTCCTGGACCAGCGATCGGTGCTGTTCCGCGAG
GAGCATTCCATTGACGAGGCCGAGGAGGAGGCGGGCGAGGCCGATGACGA
TCGGCGGTCACGCAAATCGGGCAGCGTTCTCAGTCGCGCTGGTTCCGACC
CGAACTTTGATTCCGCGGAAAGCTTTGCTTCCGCTCTCGACCAGGTGGCG
GATCTGCGTGAGTTCGATGGCTTTATTGAGACCTCGTACGAAGAGTATCC
GCTATTCCAGAGTGCACTGAAGCATCACGATGAGTACACGGTGCCGTGTC
GTACCATTCGGGCGGAGTTGATGCACTGCAGCACCGAATACCGAATACCT
GAGCCAGCTGCACTGCGTTCGGTTGGGCCTTTCAGTTCCTCTTCAAGGAT
GCCGCTGTGGGACAGTGGAATCTGCGATGCTGTCGGCAGAATTCTCACTG
AATCTGCTTTTGTCTGGTCGATACGATACTAGCAGTTTCTTGGTGGCTAC
GAGGACATGAGTGAACTATCTGTCCGATAGCACTATCTGCCCTGCATGAT
GGGAGCTGGGACACGCCAGGTCAGGCATGACTTCTACGAATTCTGTTTGA
ACTCCAATGACCCTGAAAATTCGTATAAGGAAA
FMO03932.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12125-RC | 3773 | CG12125-RC | 1474..2644 | 36..1203 | 5055 | 96.3 | Plus |
| CG12125-RB | 2286 | CG12125-RB | 455..1625 | 36..1203 | 5055 | 96.3 | Plus |
| CG12125-RA | 2754 | CG12125-RA | 455..1625 | 36..1203 | 5055 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8435194..8436213 | 1132..109 | 4410 | 97.6 | Minus |
| X | 23542271 | X | 8436271..8436347 | 112..36 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:21 has no hits.
FMO03932.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:27 Download gff for
FMO03932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 451..1554 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:36 Download gff for
FMO03932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 450..1553 | 28..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:57 Download gff for
FMO03932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12125-RA | 451..1554 | 28..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:57 Download gff for
FMO03932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8435187..8436211 | 111..1139 | 97 | <- | Minus |
| X | 8436273..8436351 | 28..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:27 Download gff for
FMO03932.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8329220..8330244 | 111..1139 | 97 | <- | Minus |
| arm_X | 8330306..8330384 | 28..110 | 95 | | Minus |
