FMO03934.5prime Sequence
1214 bp (1085 high quality bases) assembled on 2008-07-21
> FMO03934.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACAGAAGCGG
AAATTTGCAAACTATGCAAGGATAACCGAGCAATTGAGATCGATCTCGAG
AAGCCCAAATTCAAATCGGCCAATAAACTGCTGCAAAGACTTTTCGATTG
GTACAAAATTGATGCTGCTATCCTGGGGGAAAATTACTGCATTTGCGAGC
CCTGCTTTGGAGAGACTTTGCGCATAAGCGAATCCCTGGAGAAGTGGGGC
ACGGCCCAGGACGAGTTTCACCGGAGGCCCATCGAAATAGACGACTCCAC
TGCATTTCAGATCAAGTTGGAGGTGACATCAAACAAAGAAGAGGTAGAAA
CGGAAAAGAATGATGAGGAGAATTCTTTCGATCAGCATATCGCGGAGCCA
GTGAAGGAAGATCCATTGGAAAAAAACGAGCATATGGAGATCGTAGTCGA
AGAATCTTTGAAAACCGCGTCCGTGGATTTCTTCAGCGTGGGATTGTCAC
GCGATGGCTTGGCAGTCACCAAGTTCTTCAAGGACAAGACCCAAGCCACT
CGGATGCTGTGCACCTGTTGCGGCCATGTGCTCGAAATCCTGACCCACAT
ACGCATGCATTCTTGTAAACCCCGCCCGAATCCGGTCTACTATTGCCGCG
ATTGTGGTTCAGAGTTCCACAAACTACACGAACTACATGAGCACATGAAG
ACGATGAAACACAACAAGACCATGTGCGGCGCAAAGGATTTGGAATTTCT
GTGCCTCAGATGCAACCAGATATTCCCACGCTATTTCGACGTTATCCGCC
ACGAGAACAGCGTTCACAATGTATCCGATTTCATCTGCGTGGAGTGCAAC
ATGTCCTTCGCTAACCAAGGATCCTACAGGAGGCACACGAGGAGCCATAA
AGTCAAATTCACGCAGCAGCGATTTTATGAGTGCCCATATAAGGACTGCA
CCTCAAGTATCGAGTGTGGGCGCGCTTAATGTCGCACATGAGTTCCCACG
GCCTCTTTTCTGATTCAAAAGCAAAGTGCCGTCTACCCACAGAACGACGT
CTTCTGGAAGGCAGTTTATGACGCTGACCCATGAACGGTTGACCGATCGC
GAAAGTGCCTACCGCAGAAAAGCTTTACGCTAGGCGATTCCCGAAATTCC
GAGAATGTACTACGGAAGATAAGTCATCAACATGCCAAGATATTCCCTGT
GACAGAGGAAAATA
FMO03934.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CkIIalpha-i1-RA | 1585 | CG6215-RA | 70..1180 | 38..1132 | 5150 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15817232..15818149 | 164..1076 | 4330 | 99.1 | Plus |
| 3L | 28110227 | 3L | 15817048..15817174 | 38..164 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:43 has no hits.
FMO03934.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:32 Download gff for
FMO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 54..1133 | 21..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:27 Download gff for
FMO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 40..1119 | 21..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:09 Download gff for
FMO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CkIIalpha-i1-RA | 54..1133 | 21..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:09 Download gff for
FMO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15817232..15818169 | 164..1092 | 98 | | Plus |
| 3L | 15817032..15817173 | 21..163 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:32 Download gff for
FMO03934.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15810132..15810273 | 21..163 | 96 | -> | Plus |
| arm_3L | 15810332..15811269 | 164..1092 | 98 | | Plus |
