FMO03935.5prime Sequence
1227 bp (1058 high quality bases) assembled on 2008-07-21
> FMO03935.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATGATGGAAA
TGAAAACATTAGTATGGAAGTGGTGGAGCCCGAAGACGCCGAGAGCGACA
TGAGCTCTGACAGTGGTAGTGACGCAGAAGACGATACCGCTGAGCCCAAA
GCCCCCAAAGAGGTCTACTTGCCCGGAACCAAACTCGCAGACGATGAGGA
GCTGGTCTGCGATGAGAGTGCGTACGTGATGCTGCACCAAGCTTCTACGG
GAGCTCCCTGCCTGAGCTTTGATGTCATTCCCGACGAGTTGGGCAGCGGA
CGGCAGTCGTTCCCGATGACGGCTTATATTGTGGCCGGCACGCAAGCTTC
CCGCGCCCATGTCAACAACCTTATTGTGATGAAAATGAGCAACCTGCACA
AGACGCAGGACAATGACGGCGACGAAGACGAGGAGCTAGAAGACGACCAA
GACGACGTGACTGACAGGGAGGAGCTCAAAAAGCCGCAGATGACATGCGC
CCTTGTCAAGCACCAAGGGTGCGTTAATCGCGTCCGTGCCCGCCGATTGG
GCAATTCGGTCTACGCTGCCTCCTGGAGCGAACTTGGTCGTGTGAACATT
TGGGACCTAACTCAGCCATTGCAGGCCGTGGAGAACGCTCAGTTGGCCAA
GCAGTACGAGCAAAGCGAAGCGCGTCCAGTGTTTACTTTTGGTGGCCATC
AGCAGGAGGGCTTCGCCATCGACTGGAGTCCCAGTGCAGATGGTGTACTG
GCGACAGGGGACTGCCGGCGAGACATACACGTGTGGACTCCGGTAGAAGA
CGGCACATGGAAAGTTGATCAACGTCCCCTAGCGGGCCACTCACAGTCAG
TTGAAGATCTGCAATGGAGTCCAAACGAACGTAGCGTTCTCGCGTCCTGT
TCGGTGGACAAAACCATCCGAATTTGGGACTGCCGCGCCTCGCTCAGAAA
GCATGTATGCTGACATGCGAGGACCCCACACCAGAGCGACGTAAACGTGA
TTTCGTGAATCGCACGAGCCTTTTATCGCAGTGCGCGACGACGCTACCTC
CCACATCTGGACCTACGTCAGTTTAGAAGCCAAAAGCCGAATGGCCCTTT
AGCCCCCACCCGACCACATCCACTACTGGTCGATTGCATCCGCAAGGCCT
TACGTACTGGTCTCAGCGGTACATGACCATTGCTTGTGGAATTGGCGTGT
ATAGGAGGACCTCTCTGCATTACGAGC
FMO03935.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)09851-RB | 1811 | CG12792-RB | 100..1287 | 37..1210 | 5015 | 96.2 | Plus |
| l(2)09851-RA | 1536 | CG12792-RA | 100..1287 | 37..1210 | 5015 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5754616..5755610 | 37..1029 | 4765 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 362..433 | 1135..1065 | 123 | 65.3 | Minus |
FMO03935.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:44 Download gff for
FMO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 96..1164 | 30..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:52 Download gff for
FMO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 85..1153 | 30..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:59 Download gff for
FMO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)09851-RA | 96..1164 | 30..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:59 Download gff for
FMO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5754602..5755659 | 27..1074 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:44 Download gff for
FMO03935.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1642107..1643164 | 27..1074 | 98 | == | Plus |
