FMO03938.5prime Sequence
1183 bp (1031 high quality bases) assembled on 2008-07-21
> FMO03938.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATAGAGCTAG
CGGTGTCCTGTCGCTGCTGTTTGTGGCCAGCGCCCTGGGCGGCGTGATCG
AGGACTTTGAATACCTATCGGTGGCCGAGATGTGCGACCTGCTGCCGCAG
GAGACAAGCTTCCTGCGACCGAATACCTGCGACAACTGGGTGCGGTGCGC
CAGCAACTACAGCGTGCTGGAGCAGGGCGGCTGTGCCGCAGGACTCAACT
ACAACAAGGAGCTAGGCCGCTGCATCCTGGCATCCTCCAGCGCCGCGGTG
TGTCCCTATGCCGACAGCATTGCGGACAAGGCCACGAACCTGTGCGCCAA
CGAAACGGAAGGCGCCTTCATCGTGGATCCCAGCAGCAGCGATTGTCGCG
GCTACATCTTGTGCAAGTCGCACAAGCAGATCAAGGCCAACTGTCCCAAC
GAGCTGATCTTCCATCCCGTATCGAGGTCTTGCGTGTACGAAAAGCAGTA
CCGTTGCCCCATCAGCCAAACGAAGAAGACCAGTCCCGCCTGCCGATCCC
TGCCGAACAACACCCGTCTGGCCGATCCCGTCCACTGTGACCAGTACTAC
GAGTGCGTCAGCGAGGTCTTGCACAGCCGAGCCTGTCCAGTGGCCAGTGC
CTACGATGCTAATCTCGGCTACTGCGTGGATGTGGCTGAGGTGTCCTGCT
ACGAGAGTGCCGCCCTGCCGGAACCGGAAAACACCTTCTGCCTGGACAGT
GCCACCGGATCCGCTCGCGTTGGCTACTTTGCCGACGACGAGTCCTGCTC
CCACTACTATATCTGTGGCAGCCCCGTCGCCGGCAAGCACGACACGGAGC
CCAAGCACCTGAGCTGTCCACTTGGGCCAGTACTTCGACTTCGAGAAGCT
CTCGTGCCGCGACAGACTTAACGTACGCTGCCAGCTGGACAGGTGTGTGG
GCACAAACATCACCTACGTAATCGTCGCGGCGAATTGACAAGCTATGGAC
GTTGCTCCGGCGGATGACCGTCAGCTTGGCCAGTGCCCAACGGCCTACTA
CTTCGACGAGCGCATCAGGGATGCCAACAGACACTACCAAACATCGCAAT
GTTCGGTGCAAGCTTCTAGACATTTCGTTTGGGCGCGCCGGCAGTAATGT
CCTATCCTAACTTACCTAATCATATCCACACCG
FMO03938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7017-RB | 1560 | CG7017-RB | 88..1166 | 35..1108 | 4995 | 98.1 | Plus |
| CG7017-RA | 1414 | CG7017-RA | 88..1166 | 35..1108 | 4995 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20210733..20211754 | 1064..45 | 4765 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:42:03 has no hits.
FMO03938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:36 Download gff for
FMO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 128..1178 | 35..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:48 Download gff for
FMO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 84..1134 | 35..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:07 Download gff for
FMO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7017-RA | 88..1138 | 35..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:07 Download gff for
FMO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20210682..20211754 | 45..1114 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:36 Download gff for
FMO03938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20203782..20204854 | 45..1114 | 97 | | Minus |
