FMO03939.5prime Sequence
590 bp (590 high quality bases) assembled on 2008-07-21
> FMO03939.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAGATCAAC
GTCGTTGTACTTGTGGCCATGTCCGTGCTGCTCGGTGTCCAGGCTCGGCC
TTCCGATTCCCCGGATGCCCATGCCGAGATCCGGAGCTTTGTCAACGAAC
TGAAGCAGGAGGATGGCATCTACAATTACCAGTTCGAGACGTCCAACGGG
ATTGCGCAGCAGGAGCAGGGAGTGGGTGGTTACTACGCTAGCGGCTCATC
ACAGTACTACACACCCGAGGGCCAGCTCATCCAGTTGACCTACACGGCAG
ATGAGAACGGATTCCAGCCGCAGGGCGAGCACCTGCCCACGCCCCATCCC
ATTCCCGAGGCAATCCTGAAGTCGCTGGAGTACAATCGCAACCACCCGGA
GGAGGATGGGGAGTACGAGCACCACGACCATCACCATGACCACCATGAGC
ATCACCAGAGCCATGGTCAGGAGCAGGGCAAGCAGTATCTGCAGCCAGCC
GGTGCTCTGCTCGCACCTGCGTCATCGCCAGTGTTGTCTGTGGGTCAGGT
CCTGCCCTACGACAGGAAGCTAGCAAGCTTTCTAGACCAT
FMO03939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr65Eb-RA | 1004 | CG8638-RA | 79..615 | 36..572 | 2685 | 100 | Plus |
| Cpr65Ec-RA | 566 | CG8634-RA | 187..424 | 157..394 | 290 | 75.8 | Plus |
| Cpr65Az-RA | 720 | CG12330-RA | 527..597 | 286..356 | 205 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7088102..7088626 | 572..48 | 2625 | 100 | Minus |
| 3L | 28110227 | 3L | 7093462..7093699 | 157..394 | 275 | 74.4 | Plus |
| 3L | 28110227 | 3L | 6161396..6161466 | 286..356 | 205 | 85.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:50 has no hits.
FMO03939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:43 Download gff for
FMO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 70..622 | 28..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:05 Download gff for
FMO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 68..620 | 28..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:10 Download gff for
FMO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr65Eb-RA | 70..622 | 28..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:10 Download gff for
FMO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7088095..7088626 | 48..579 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:43 Download gff for
FMO03939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7081195..7081726 | 48..579 | 99 | <- | Minus |
