FMO03940.5prime Sequence
964 bp (964 high quality bases) assembled on 2008-07-21
> FMO03940.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTTTGTGCAA
GTGCCCCAAGCGCCTGGTGACCAACCAGTTTTGCTTTGAGCATCGAGTCA
ATGTTTGCGAACACTGTATGGTTCAGTCTCATCCAAAGTGCATTGTGCAG
TCGTATCTGCAGTGGCTGCGGGACAGCGACTACATCTCCAACTGCACTCT
GTGCGGCACCACATTGGAGCAGGGCGATTGCGTGCGCCTCGTCTGCTACC
ATGTTTTCCACTGGGACTGCCTGAACGCCCGCCAAGCCGCACTGCCTGCC
AACACAGCCCCTCGGGGTCACCAGTGCCCCGCCTGCAGTGTGGAGATCTT
TCCCAACGCCAACCTGGTCTCCCCGGTGGCCGATGCTCTGAAGAGTTTCC
TGTCGCAGGTTAACTGGGGCAGAAATGGCCTGGGACTCGCCCTGCTCTCT
GAGGAGCAGAGCAGCAGTCTGAAGGCCATTAAGCCCAAGGTGGCAAGCCA
GGCGGCTGTCAGCAACATGACCAAAGTGCACCACATCCATTCCGGTGGCG
AGCGAGAGCGCACGAAGCCCAATGGCCATGACGCCGTGAGCCCACATTCC
GTGCTCCTAATGGATGCATTTAATCCCCCAAGTGCGGGCGACTACGCCAG
CAGCAGAAGACCGCTGCTGCCCCGTCAGTCGCCAATTGGTGGGACAGATC
GAGACGATAATAAGTACCAGCGCCGCACTCCTGCGGAATTGTTCTCGCGA
TGGACACGCCGCTTCTATGCGCCCTCCTCGCGGCCGCCGTGGCGTCGCAC
TTGGTTCCTGGTGACCGCCGGCATTTTGGCCTTTGTCTTGTTCGTCTATC
TTATGGCCTGGCTGGGTCGCGGAGGATCTGATGCCGTGGACGAGGGCTGG
AATAACCCCAATCCACAGCCGAACCACTACGAAGCAAGCTTTCTAGACCA
TTCGTTTGGCGGCG
FMO03940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5382-RB | 1165 | CG5382-RB | 171..1067 | 37..933 | 4485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22364671..22364958 | 933..646 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 22365019..22365225 | 646..440 | 1020 | 99.5 | Minus |
| 3R | 32079331 | 3R | 22365276..22365469 | 444..251 | 970 | 100 | Minus |
| 3R | 32079331 | 3R | 22365537..22365650 | 250..137 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 22365712..22365813 | 138..37 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:24:37 has no hits.
FMO03940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:50 Download gff for
FMO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 162..1067 | 25..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:18 Download gff for
FMO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 160..1065 | 25..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:07 Download gff for
FMO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5382-RB | 162..1067 | 25..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:07 Download gff for
FMO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22364671..22364957 | 647..933 | 100 | <- | Minus |
| 3R | 22365019..22365220 | 445..646 | 100 | <- | Minus |
| 3R | 22365276..22365469 | 251..444 | 100 | <- | Minus |
| 3R | 22365537..22365648 | 139..250 | 100 | <- | Minus |
| 3R | 22365712..22365821 | 25..138 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:50 Download gff for
FMO03940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18190393..18190679 | 647..933 | 100 | <- | Minus |
| arm_3R | 18190741..18190942 | 445..646 | 100 | <- | Minus |
| arm_3R | 18190998..18191191 | 251..444 | 100 | <- | Minus |
| arm_3R | 18191259..18191370 | 139..250 | 100 | <- | Minus |
| arm_3R | 18191434..18191543 | 25..138 | 95 | | Minus |
