FMO03941.5prime Sequence
1116 bp (1060 high quality bases) assembled on 2008-07-21
> FMO03941.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGCCGCCAAGA
CTGCCAGGCGGCCATGGAGGAGCCATGCGTAGTCGGAGCAGCAGCAGTGG
CCACCACTTAAACACAACGTTTCACAAGCGCCGACGGAGGCGACAGCAGC
ACCACATCGGTGGCAGCCACATCAGCATCAGCCACGGCAGTTACCTGGCT
CTGCTACTGCTGTCCACCACCTGCTCCCTGGTGGCCACCAGCGCCTCCTC
TTCATCCTCCGCTGCAAACACAGACATAGCGCCACCAGATCCACCGCCGG
TCAGCCAGGTGTCCATCGCCTCCAGCTCGCCCTGCGCCCCACAGCATTGG
TGGGACTCGCAGCGAGATCGCTGCACACCGTGCACCCGCTGCCAGGGCGA
GATGATACCGCTGCGACCCTGCCAGCTACACACGGACACCATCTGCGGTT
CCATATACGACCTCAAGATCGACTGGGTTGTCTTGGCCAAGACCGAACCC
AACTGGAAGGAGCGCCGAAAGTCCTCCGAGTATGAGCACTTCGAGCACAA
TGCCCCACTGCAGCACCTGACCCACGAGCAACTGCAGCAGCTGCACGAGG
AGGCGGCCGCCGCCTGGGTCCTTGACTGGCAGACTGGCGTTCTTTACGTG
GCCGTGCTCACATGCCTGGTCTTCTTCTCGGTGGCCGCCTGCATCCTCAT
CCACCACATGCGCCAGTGGCGACGTATGGAGCGTCGCCTGGACCAGGATG
TGGAGGAGCTGTCAACCAAGCTGATGGCCAAGCTGGCGGAGGTGCAGAGC
CTGCACGGAGGCACCTTCTTCATCGGCAACGCGGACGCCTTGCGAGGACT
GCCCGCCTCCGCAGCGACGACGCATCCAGCAACGACGCAGTCGGGAATCT
TCCAGCCACAACACGTGCTGCTGCCTGAAAAACGCGGCAAGCATCAAGAG
CGACGAATCCTGAAGACCCTGCAGCCCGGCCAATGTCTACAATGAAGAGA
GCAACGCTGGATTGGGGCGGCATGGGCGTGGCCTGGGCGTCCGCGGCTGT
TTCCGGCCTGAAGGCGCAAGCTTTCTTAGAACAATTCGTTGGCGCCCGGC
CAGTAAGTGTCATAAT
FMO03941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wgn-RA | 2415 | CG6531-RA | 501..1527 | 36..1064 | 4975 | 99.1 | Plus |
| wgn-RB | 2594 | CG6531-RB | 501..1213 | 36..748 | 3565 | 100 | Plus |
| wgn-RB | 2594 | CG6531-RB | 1391..1706 | 747..1064 | 1420 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18628775..18629251 | 512..36 | 2385 | 100 | Minus |
| X | 23542271 | X | 18628474..18628710 | 747..511 | 1185 | 100 | Minus |
| X | 23542271 | X | 18625638..18625818 | 927..747 | 890 | 99.4 | Minus |
| X | 23542271 | X | 18624930..18625062 | 1064..930 | 435 | 94.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:24:24 has no hits.
FMO03941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:11 Download gff for
FMO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wgn-RA | 501..1534 | 36..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:55 Download gff for
FMO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wgn-RA | 496..1529 | 36..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:36 Download gff for
FMO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wgn-RA | 501..1534 | 36..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:36 Download gff for
FMO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18625638..18625817 | 748..927 | 99 | <- | Minus |
| X | 18628474..18628708 | 513..747 | 100 | <- | Minus |
| X | 18624923..18625064 | 928..1071 | 92 | <- | Minus |
| X | 18628775..18629251 | 36..512 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:11 Download gff for
FMO03941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18518956..18519097 | 928..1071 | 92 | <- | Minus |
| arm_X | 18519671..18519850 | 748..927 | 99 | <- | Minus |
| arm_X | 18522507..18522741 | 513..747 | 100 | <- | Minus |
| arm_X | 18522808..18523284 | 36..512 | 100 | | Minus |
