FMO03943.5prime Sequence
712 bp (712 high quality bases) assembled on 2008-07-21
> FMO03943.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTACGAGTGTC
TTATCGGTGTTCTAAGCTGCCTATTGGTAGCTCTCCCCAAAGGAAATTGC
CACAGCATCAGTGGTTTAAATTCCACCTTGAATCTACCAGAGATTCGAGG
TGACCAGTTCCTGTACTTTGGATTCGGAAGCAATATGCTGATCAAGAGAA
TTCACATCCAGAACCCTTCGGCGGTAAGAATTGGTCCGGCCCTGCTACCC
GATTATCGATTGGACTTTGCCTTGGAATCAGCCGGTTGGAGCGGTTCTGT
GGCCACCATCGTTCCCACCCAGGGTGATCATGTCTGGGGAACCCTCTGGA
AGATCGATCTAAGTAATCTGCCGGATATAGACAGTCAAGAAGGCGTTAGT
CAAGGCATTTATGAGCCTCGCACCGTTTACGTAAAACTCCATGGGGAATC
TGAATCAACTCCTGCCCGAGCTTATCTACTGACCAAGCAGCCAGAGAGCA
ATCTGTACGAACTGCCTAAGGACTCCATTCCCTTATCCAGACAGCCCTCG
AAAACATATCTGCAATGTCTCGTTAAAGGCGCTATTGAGAGCTCCGTTCC
GGAGGATTATGTTCAGCGATTGAGGAGCATTAAGCATAATGGACAAGTTA
ACTCCTATCTGGAACGAAAACTGGAACTGGGAGGGGTAACCCTTGCAAGC
TTTCTAGACCAT
FMO03943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4306-RA | 1029 | CG4306-RA | 96..755 | 35..694 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18462719..18463068 | 384..35 | 1750 | 100 | Minus |
| 3L | 28110227 | 3L | 18462231..18462543 | 694..382 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:25 has no hits.
FMO03943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:43 Download gff for
FMO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 88..759 | 23..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:21 Download gff for
FMO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 82..753 | 23..699 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:08 Download gff for
FMO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4306-RA | 88..759 | 23..699 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:08 Download gff for
FMO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18462227..18462540 | 385..699 | 99 | <- | Minus |
| 3L | 18462719..18463075 | 23..384 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:43 Download gff for
FMO03943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18455327..18455640 | 385..699 | 99 | <- | Minus |
| arm_3L | 18455819..18456175 | 23..384 | 98 | | Minus |
