FMO03944.5prime Sequence
556 bp (556 high quality bases) assembled on 2008-07-21
> FMO03944.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGGGTCCG
CACTGCGCCGCCTGATGGCGGAATACAAACAGTTAACACTTGACCCGCCC
GAGGGCATTGTGGCCGGCCCCATCAGCGAGGACAACTTCTTCGAGTGGGA
GGCACTGATTGCCGGACCTGAGGGCACTTGTTTCGAGGGCGGAGTGTTTC
CTGCCCGGCTCATCTTTCCGACCGACTATCCTCTGAGTCCGCCTAAAATG
AAATTCACTTGTGACATGTTCCATCCCAACATATTCGCCGACGGGCGGGT
CTGCATATCAATACTACACGCACCCGGCGACGATCCCATGGGCTACGAGC
TATCCGCGGAGCGCTGGAGTCCTGTCCAGAGCGTGGAGAAGATTTTGCTT
AGTGTGGTCAGCATGCTGGCGGAACCCAACGATGAGAGCGGCGCTAATGT
GGATGCAGCAATTATGTGGCGCGAACAGAGGGATGAGTTCAACGCCATCG
CCCGACGGCTGGTGCGCAAAACTCTTGGTTTACCGGCGGCAAGCTTTCTA
GACCAT
FMO03944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ubc7-RB | 1886 | CG4443-RB | 325..825 | 38..538 | 2505 | 100 | Plus |
| Ubc7-RA | 1435 | CG4443-RA | 325..825 | 38..538 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16594271..16594530 | 163..422 | 1300 | 100 | Plus |
| X | 23542271 | X | 16594690..16594806 | 422..538 | 585 | 100 | Plus |
| X | 23542271 | X | 16594106..16594187 | 81..162 | 410 | 100 | Plus |
| X | 23542271 | X | 16594001..16594043 | 38..80 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:59 has no hits.
FMO03944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:36 Download gff for
FMO03944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crl-RA | 325..828 | 38..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:50 Download gff for
FMO03944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| crl-RA | 323..826 | 38..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:36 Download gff for
FMO03944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ubc7-RA | 325..828 | 38..542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:36 Download gff for
FMO03944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16594106..16594187 | 81..162 | 100 | -> | Plus |
| X | 16594271..16594530 | 163..422 | 100 | -> | Plus |
| X | 16594691..16594809 | 423..542 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:36 Download gff for
FMO03944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16488139..16488220 | 81..162 | 100 | -> | Plus |
| arm_X | 16488304..16488563 | 163..422 | 100 | -> | Plus |
| arm_X | 16488724..16488842 | 423..542 | 98 | | Plus |
