FMO03945.5prime Sequence
1243 bp (1020 high quality bases) assembled on 2008-07-21
> FMO03945.5prime
TAACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTAGC
GCAATGGACAATTTCGACAACAGGTCGTACGGTGCCATATCAAAGGGGCG
CAGTGAATTCTCAATGCCAGAACTTACACCGGAGCAGCAAAAACTGCTGA
TTGAGCTGCGACGCAAGAAGCAGGAACTTTTACTCGAAATACAGCAAATT
AAAGATGAGTTGTGCGAGGTTGTATCGGAAATGGAGGCGCTGGATGTGCC
CGAAGACTGCAAGCATTCCAATAAAGATAAACAGATGTCCATTGGCCGTA
AAAAGTTTAACATGGACCCAAAAAAAGGCATTGAGTATCTCGTTGAAAAC
AGGCTGCTACGTCATGATCCCCAGGACGTTGCCCACTTTCTCTATAAGGG
AGAGGGACTAAATAAAACAGCCATTGGCGATTACCTCGGCGAGAAAAACG
ATTTTAATGAGGATGTGCTTAAGGCTTTTGTGGCGCTTCACGATTTCACC
AATCTCATTCTCGTACAAGCCCTCAGACAATTTCTGTGGTCGTTTCGCCT
GCCCGGCGAGGCACAAAAGATCGATCGCATGATGGAGACCTTCGCACAGC
GCTACTGTCAACTAAATCCAGATATATTCACCAACACGGACACATGCTAT
GTGCTCAGCTTCGCAATTATAATGCTAAATACCTCACTACACAATCCATC
TGTTAAAGACAAACCCACCGTTGATCAATTCATATCGATGAAATCGTGGC
ATCAACAACGGCGGAGATTTGCCCCGTGGCCTGCTGGAATCCCTTTACGA
GTCAATTCGAACAGAGCCATTTAAAATACCACAGGATGATGGAAATGATT
TGATGCACACCTTCTTCAATCCCCGACAAGGAGGGCTGGCTGTGGAAGCA
AGGCGGCAGATACAAATCGTGGAAACGACGTTGGTTCATTTTGACGATAA
TTGCTTATACTATTATGGATACACAACGGATAACGAACCACGCGGAATTA
TACCGCTGGAGAATATATCGGTGCCGCCAGATCACGATCGCCAGCAACCG
CATTGCTTTGAGTTGTTTGCCGACGGTCGTTGCTGATATAATCAAGCATG
CAGACTGACTTCTGAGCAAGTGATAAGGCCAAGCTATCGGTTACCGCATG
TTCCGCTCCACGAAGAAAATCACGGAATGGATCAGCTTTGACCAGTCCCA
TGCCATATCGTCTTATAGACACTCACTGATCTCATACCAGGCG
FMO03945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| step-RA | 1736 | CG11628-RA | 225..1391 | 42..1198 | 5055 | 96.8 | Plus |
| step-RE | 4776 | CG11628-RE | 2153..3168 | 193..1198 | 4315 | 96.4 | Plus |
| step-RD | 3095 | CG11628-RD | 1685..2700 | 193..1198 | 4315 | 96.4 | Plus |
| step-RE | 4776 | CG11628-RE | 225..377 | 42..194 | 750 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21742075..21742280 | 909..702 | 940 | 99 | Minus |
| 2L | 23513712 | 2L | 21742522..21742701 | 703..524 | 900 | 100 | Minus |
| 2L | 23513712 | 2L | 21743838..21743974 | 328..192 | 685 | 100 | Minus |
| 2L | 23513712 | 2L | 21741822..21742010 | 1096..908 | 610 | 90.5 | Minus |
| 2L | 23513712 | 2L | 21742972..21743073 | 427..326 | 510 | 100 | Minus |
| 2L | 23513712 | 2L | 21742776..21742876 | 526..426 | 505 | 100 | Minus |
| 2L | 23513712 | 2L | 21756554..21756630 | 194..118 | 385 | 100 | Minus |
| 2L | 23513712 | 2L | 21757164..21757242 | 120..42 | 380 | 98.7 | Minus |
Blast to na_te.dros performed 2014-11-28 22:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2877..2957 | 114..197 | 124 | 65.9 | Plus |
FMO03945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:05 Download gff for
FMO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RA | 219..1298 | 33..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:37 Download gff for
FMO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RA | 214..1293 | 33..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:00 Download gff for
FMO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| step-RA | 219..1298 | 33..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:00 Download gff for
FMO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21742075..21742280 | 702..909 | 99 | <- | Minus |
| 2L | 21742524..21742698 | 527..701 | 100 | <- | Minus |
| 2L | 21742776..21742875 | 427..526 | 100 | <- | Minus |
| 2L | 21742973..21743071 | 328..426 | 100 | <- | Minus |
| 2L | 21743839..21743971 | 195..327 | 100 | <- | Minus |
| 2L | 21756554..21756627 | 121..194 | 100 | <- | Minus |
| 2L | 21757164..21757237 | 47..120 | 98 | <- | Minus |
| 2L | 21741801..21742008 | 910..1116 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:05 Download gff for
FMO03945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21742776..21742875 | 427..526 | 100 | <- | Minus |
| arm_2L | 21742973..21743071 | 328..426 | 100 | <- | Minus |
| arm_2L | 21743839..21743971 | 195..327 | 100 | <- | Minus |
| arm_2L | 21756554..21756627 | 121..194 | 100 | <- | Minus |
| arm_2L | 21757164..21757237 | 47..120 | 98 | <- | Minus |
| arm_2L | 21741801..21742008 | 910..1116 | 92 | <- | Minus |
| arm_2L | 21742075..21742280 | 702..909 | 99 | <- | Minus |
| arm_2L | 21742524..21742698 | 527..701 | 100 | <- | Minus |
