FMO03947.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-07-21
> FMO03947.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTCACAAAAA
GAATACGTATCGGACTGCGAAACCGACGATGATTATTATGTCGATTTGTT
AACTTCAGGCAAGGGCAGTGATAAGAGTGAAAGTGATGTGTCGGACAAGT
CTGAAAATTATCCAGGCCTAAAATCAAAGCATACTGCGAAGGCATTGCGG
AAAACAAGGCATTGTGACGGCGATAATAGGGAATACAGGTCTAAGGAGTG
CGACGACCTTCATTCCGAAGAGGAGTCTGAAAAATCGCGGTCGGATGCTT
TATGGGCCGATTTTCTTGGCGACATTGATACTAAAAGCGTAATCAACCAA
AAAACAGATTATACGGAGGGAAACGCAGCAAGTGCTACCAATACCAATAC
GCATGAGACTTGTAATAAATATGATAAAAACGATACGGCAATAATAAAAA
CTGCACAGCAATACGATTCCAAAAGAACCACGCTTTCAGTTTCCACACTC
GGAAAAATTAAACGATCATCCGCTGAAAAGAGTATCGGTACCATGATAAA
TAAATTTGAAAAGAAAAAAAAATTGACAGTGCTTGAAAGGTCACAATTGG
ATTGGAAAATATTTAAACAAGACGAAGGCATACACGAACTTCTGTGCTCG
CATAACAAAGGCAAGGACGGGTATTTGGACCGTCAAGACTTTTTGGAGAG
AACCGATCTTAGGCAGTTTGAAATGGAAAAGAAGTTGCGGCTGTCTCGCA
CGCCATACGCAAGCTTTCTAGACCAT
FMO03947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Yeti-RB | 1576 | CG40218-RB | 35..757 | 36..758 | 3570 | 99.6 | Plus |
| Yeti-RA | 899 | CG40218-RA | 35..757 | 36..758 | 3570 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 1344449..1345085 | 672..36 | 3155 | 99.7 | Minus |
| 2R | 25286936 | 2R | 1344294..1344382 | 758..670 | 430 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:02 has no hits.
FMO03947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:28 Download gff for
FMO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 28..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:07 Download gff for
FMO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 22..755 | 28..762 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:26 Download gff for
FMO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Yeti-RA | 27..760 | 28..762 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:26 Download gff for
FMO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 1344291..1344381 | 671..762 | 96 | <- | Minus |
| 2R | 1344451..1345088 | 34..670 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:28 Download gff for
FMO03947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 470924..471014 | 671..762 | 96 | <- | Minus |
| 2RHet | 471084..471721 | 34..670 | 99 | -> | Minus |
