FMO03948.5prime Sequence
627 bp (627 high quality bases) assembled on 2008-07-21
> FMO03948.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAGGTAGCTGC
AGCAAATGGAAGCCCCTCCCCAGCGCCAACTCCTGAGGTGCCCGCTACCG
AGTTGGCCCAATTGGCGCTGGAGGATGAGCCCAAGGTTAGCTTTTCGGAT
CAGTTCAAGGCCTTCTCCAAGTTCGGGGACTCCAAGTCCGATGGCAAGCT
GATAACGCTGTCGCAGAGTGACAAGTGGATGAAACAGGCCAAAGTTATCG
ACAAGAAGATCACCACCACGGATACAGGCATCCACTTCAAGAAGTTCAAG
GCCATGAAGATCTCGCTCAGCGACTACAACAAATTCCTGGACGATCTGGC
CAAGACGAAAAAGGTGGAGCTGTCGGAGATCAAGCAAAAGTTGGCCAGTT
GTGGAGCTCCAGGAGTTGTGTCCGTTTCGGCTGGAAAAGCCGCAGCTGCC
GTGGATCGATTGACGGATACGAGCAAGTACACCGGTTCCCACAAGGAGCG
TTTCGATGCCTCCGGAAAGGGCAAGGGTATCGCGGGCAGACGGAACGTGG
TCGATGGATCCGGATATGTGAGTGGCTACCAGCACAAGGACACCTACGAC
AATGCCCACGCAAGCTTTCTAGACCAT
FMO03948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45057-RB | 1169 | CG45057-RB | 151..727 | 33..609 | 2885 | 100 | Plus |
| CG45057-RD | 869 | CG45057-RD | 137..713 | 33..609 | 2885 | 100 | Plus |
| CG45057-RC | 840 | CG45057-RC | 108..684 | 33..609 | 2885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16355633..16356030 | 430..33 | 1990 | 100 | Minus |
| 3L | 28110227 | 3L | 16355188..16355372 | 609..425 | 910 | 99.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 6959..7009 | 100..151 | 113 | 71.2 | Plus |
FMO03948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:34 Download gff for
FMO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4893-RC | 103..684 | 29..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:48 Download gff for
FMO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4893-RA | 126..710 | 24..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:31 Download gff for
FMO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45057-RC | 103..684 | 29..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:31 Download gff for
FMO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16355188..16355367 | 430..609 | 100 | <- | Minus |
| 3L | 16355634..16356042 | 22..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:34 Download gff for
FMO03948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16348288..16348467 | 430..609 | 100 | <- | Minus |
| arm_3L | 16348734..16349142 | 22..429 | 99 | | Minus |
