FMO03949.5prime Sequence
533 bp (533 high quality bases) assembled on 2008-07-21
> FMO03949.5prime
CGTATAGCATACATTATACAAAGTTATCAGTCGACATGGAGATGATGCAT
GGAGCGTCGCTGCTGTCGCGGCCAGCGGAGGAATTTGGCAACGACACCCT
GGTGGAGGAAATGTGGGCCGCAAAAGCTCTGGAACACGCCGAGGTGCACT
TTAATCTCATCACCAGCGTCCATCCCTCCCAGCTGAAGCTCACGCCCTAC
GACGACCAGATATACGCCACTTTCCGGCAGGATTTTCCCGATCTTCACGT
TGGCCGGCTTACCGATGATATTCTCAAATCCGCCACGGCGAAGCTCAAGT
GGCGCCAGTTCGCCGAGAAGTTTAACAAGTTGGACGATTACTCGTATGGC
ACCCTGATGCGCGCCGATGCCAGCAGGGAATTCTCCCCGGACAACTCTAT
CTTCGTGTTTCGCGTCCAGTTTCTGGCAATCGAGATTGCCCGGAATCGGG
AGGGACTCAACGATGAGGCTTACGAGAAGCACAAGCCCGCCAGAAAGGTA
CCCGAAGAGGAACAGGCAAGCTTTCTAGACCAT
FMO03949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7519-RA | 710 | CG7519-RA | 103..582 | 36..515 | 2385 | 99.8 | Plus |
| CG7519-RB | 683 | CG7519-RB | 223..555 | 183..515 | 1650 | 99.7 | Plus |
| CG7519-RB | 683 | CG7519-RB | 103..224 | 36..157 | 610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21493420..21493779 | 156..515 | 1785 | 99.7 | Plus |
| 3L | 28110227 | 3L | 21493247..21493355 | 47..155 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:37 has no hits.
FMO03949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:51 Download gff for
FMO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 103..585 | 36..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:50 Download gff for
FMO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 97..579 | 36..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:55 Download gff for
FMO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7519-RA | 103..585 | 36..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:55 Download gff for
FMO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21493235..21493355 | 36..155 | 96 | -> | Plus |
| 3L | 21493420..21493782 | 156..519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:51 Download gff for
FMO03949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21486335..21486455 | 36..155 | 96 | -> | Plus |
| arm_3L | 21486520..21486882 | 156..519 | 99 | | Plus |
