FMO03950.5prime Sequence
917 bp (917 high quality bases) assembled on 2008-07-21
> FMO03950.5prime
GTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGTGCCTTCATTG
TTATGTGCTTGGTGGCAGTCGCCTGCGCCGATAAGCTCGGCTACAACTAC
CAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTTGCTCCTGGAAGTGG
CAGCATTGGAGGTGGCTCCATCGGAGGAGGCAGCATCGGAGGAGGCAGCA
TCGGAGGCGGCAGCATCGGAGGCGGCAGCATCGGAGGCGGCAGCATCGGA
GGATCCATTGGTGGTGGTTCCATTGGAGCCAGCATCGGAAGCGGTGCCGG
TCTGGGTGGTCTGAGCAGCATTGGTGGTGGAAGCATTGGCAGCATCGGAA
GCATTGGTGGTGGTGACGCCCTCAGTGCCCCCGTCTCCTACAACGCCCCT
GCCCCAACCGCCGAGCTGGAGAAGGAGTTCTTCACCTTCACCGCCAACGA
GCAGGACTTCGATGAGCCCCAGCAGCTGGAGCGTGTGTCCTCTGCCCTGA
ACAAGGCCCTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGCCTG
GAGAACGCCGCCCTGGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACCGC
CATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATCTGGCCAACAAGC
TGAACGCCATCCGCAGCAACAACAACAACAAGCCCGAGGTGCACTTCGTC
AAGTACCGCACTCCCGAGGACGCTGCCAACGCCCAGCGCGCCATCCAGGG
TCAGTACGACCAGCTGGGAGGATCCAGCCAGGCCCACAACGGTGGTGTTG
CCCCCGTCCTGAACTTCGCTTCCGCCGCTCCAGTGCGTCAGGCCGCCGCC
CAGAGCCCCGACAACTCCTACCTGCCATCTTCGGTCTTCCGTCGCGTCGC
AAGCTTTTCTAGACCAT
FMO03950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlM-RA | 1030 | CG5468-RA | 50..913 | 35..898 | 4320 | 100 | Plus |
TwdlL-RA | 1002 | CG6447-RA | 51..898 | 35..894 | 1975 | 82.5 | Plus |
TwdlL-RB | 1066 | CG6447-RB | 133..962 | 53..894 | 1930 | 82.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26619259..26620107 | 50..898 | 4245 | 100 | Plus |
3R | 32079331 | 3R | 26622581..26623092 | 894..383 | 1630 | 87.9 | Minus |
3R | 32079331 | 3R | 26632324..26632832 | 377..885 | 1570 | 87.2 | Plus |
3R | 32079331 | 3R | 26624691..26625202 | 894..383 | 1540 | 86.7 | Minus |
3R | 32079331 | 3R | 26628051..26628380 | 823..494 | 1140 | 89.7 | Minus |
3R | 32079331 | 3R | 26630292..26630621 | 494..823 | 1080 | 88.5 | Plus |
3R | 32079331 | 3R | 26634085..26634494 | 410..819 | 910 | 81.5 | Plus |
3R | 32079331 | 3R | 26626107..26626444 | 835..498 | 820 | 82.8 | Minus |
3R | 32079331 | 3R | 26625294..26625520 | 276..53 | 620 | 85.9 | Minus |
3R | 32079331 | 3R | 26620780..26621063 | 795..512 | 445 | 77.1 | Minus |
3R | 32079331 | 3R | 26623210..26623409 | 253..54 | 445 | 81.5 | Minus |
3R | 32079331 | 3R | 26631931..26632040 | 35..144 | 340 | 87.3 | Plus |
3R | 32079331 | 3R | 26656932..26657251 | 497..816 | 340 | 73.8 | Plus |
3R | 32079331 | 3R | 26640530..26640720 | 572..762 | 295 | 77 | Plus |
Blast to na_te.dros performed 2014-11-28 19:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2394..2432 | 643..681 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2827 | 643..680 | 109 | 76.3 | Plus |
FMO03950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:16 Download gff for
FMO03950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlM-RA | 40..917 | 24..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:54 Download gff for
FMO03950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlM-RA | 35..912 | 24..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:39 Download gff for
FMO03950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlM-RA | 40..917 | 24..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:39 Download gff for
FMO03950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26619259..26620111 | 50..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:16 Download gff for
FMO03950.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22444981..22445833 | 50..903 | 99 | | Plus |