Clone FMO03950 Report

Search the DGRC for FMO03950

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTwdlM-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03950.5prime Sequence

917 bp (917 high quality bases) assembled on 2008-07-21

> FMO03950.5prime
GTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGTGCCTTCATTG
TTATGTGCTTGGTGGCAGTCGCCTGCGCCGATAAGCTCGGCTACAACTAC
CAGCCCGTGGGACACTCCAGCTCCGGACTGTCCTTTGCTCCTGGAAGTGG
CAGCATTGGAGGTGGCTCCATCGGAGGAGGCAGCATCGGAGGAGGCAGCA
TCGGAGGCGGCAGCATCGGAGGCGGCAGCATCGGAGGCGGCAGCATCGGA
GGATCCATTGGTGGTGGTTCCATTGGAGCCAGCATCGGAAGCGGTGCCGG
TCTGGGTGGTCTGAGCAGCATTGGTGGTGGAAGCATTGGCAGCATCGGAA
GCATTGGTGGTGGTGACGCCCTCAGTGCCCCCGTCTCCTACAACGCCCCT
GCCCCAACCGCCGAGCTGGAGAAGGAGTTCTTCACCTTCACCGCCAACGA
GCAGGACTTCGATGAGCCCCAGCAGCTGGAGCGTGTGTCCTCTGCCCTGA
ACAAGGCCCTGCGCGTTGTCTTCATCAAGGGACCCGAGAACCGTGGCCTG
GAGAACGCCGCCCTGGCCCTCGCCAAGCAGGCTGCCCAGCAGGAGACCGC
CATCTATGTCCTGAACAAGCAGGCCGATATTGGAGATCTGGCCAACAAGC
TGAACGCCATCCGCAGCAACAACAACAACAAGCCCGAGGTGCACTTCGTC
AAGTACCGCACTCCCGAGGACGCTGCCAACGCCCAGCGCGCCATCCAGGG
TCAGTACGACCAGCTGGGAGGATCCAGCCAGGCCCACAACGGTGGTGTTG
CCCCCGTCCTGAACTTCGCTTCCGCCGCTCCAGTGCGTCAGGCCGCCGCC
CAGAGCCCCGACAACTCCTACCTGCCATCTTCGGTCTTCCGTCGCGTCGC
AAGCTTTTCTAGACCAT

FMO03950.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlM-RA 1030 CG5468-RA 50..913 35..898 4320 100 Plus
TwdlL-RA 1002 CG6447-RA 51..898 35..894 1975 82.5 Plus
TwdlL-RB 1066 CG6447-RB 133..962 53..894 1930 82.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26619259..26620107 50..898 4245 100 Plus
3R 32079331 3R 26622581..26623092 894..383 1630 87.9 Minus
3R 32079331 3R 26632324..26632832 377..885 1570 87.2 Plus
3R 32079331 3R 26624691..26625202 894..383 1540 86.7 Minus
3R 32079331 3R 26628051..26628380 823..494 1140 89.7 Minus
3R 32079331 3R 26630292..26630621 494..823 1080 88.5 Plus
3R 32079331 3R 26634085..26634494 410..819 910 81.5 Plus
3R 32079331 3R 26626107..26626444 835..498 820 82.8 Minus
3R 32079331 3R 26625294..26625520 276..53 620 85.9 Minus
3R 32079331 3R 26620780..26621063 795..512 445 77.1 Minus
3R 32079331 3R 26623210..26623409 253..54 445 81.5 Minus
3R 32079331 3R 26631931..26632040 35..144 340 87.3 Plus
3R 32079331 3R 26656932..26657251 497..816 340 73.8 Plus
3R 32079331 3R 26640530..26640720 572..762 295 77 Plus
Blast to na_te.dros performed 2014-11-28 19:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2394..2432 643..681 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2827 643..680 109 76.3 Plus

FMO03950.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:16 Download gff for FMO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlM-RA 40..917 24..903 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:54 Download gff for FMO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlM-RA 35..912 24..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:39 Download gff for FMO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlM-RA 40..917 24..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:39 Download gff for FMO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26619259..26620111 50..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:16 Download gff for FMO03950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22444981..22445833 50..903 99   Plus