FMO03951.5prime Sequence
920 bp (920 high quality bases) assembled on 2008-07-21
> FMO03951.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGATTGG
GCTAAAAAAGCAGAGGACCAGGAGGTTTCTAAGCTGGTCGACAAACTTAA
CCTAGACTCTAAATCTGGAGAAGAAACCGATTTCGACGTCGCTGATCCAG
CTGAAACAAGTCTCCTCATAAAAATACTAGGAAAGGGGCTGGTGAACACA
AAGCTATCTCTCGACATTCAACAAAAAAATCCGAATTCACCCTTACATTC
CGTGAAAACATTTGAAGCCTTACACCTAAAAGCATCTCTGTTAAAGGGAA
TTTACGCAATGGGGTTTAATACTCCATCAAAAATTCAAGAAACAGCGTTG
CCAACTCTTCTCGCAGATCCACCGCAAAATATGATAGCACAAAGCCAGTC
TGGGACAGGCAAAACAGCCGCATTTGTATTGGCCATGCTTAGCCGAGTCA
ACGTTTGTTTAAATCATCCTCAGGTTCTGTGTTTATCCCCTACGTACGAG
TTGGCAATTCAAACTGGAGAAGTGGCTGCGCGAATGGGACAATTTTGTCG
GGAAATAAAGCTAAGATTTGCAGTACGCGGAGAAGAGGTTGATCGCAGTA
AAAAAATTGAAGAACACATTTTGATTGGCACCCCAGGAAAACTTTTGGAT
TGGGGAATAAAATTTCGTTTATTTGATATGAAGAAAATATCCGTTTTTGT
ATTGGATGAAGCAGATGTAATGATAGCCACCCAAGGTCATCATGATCAAT
GCATTCGAATACACAAAATGCTGAATCCACATTGCCAAATGTTGTTTTTC
TCTGCTACTTATGGTAAAGAGGTTATGGACTTTGCTCGGCTGATTGTTGC
AGATCCCACAATAATAAGACAAAAAGAACTGCTGCTTGGCTTGCAGCAAA
AAGCAAGCTTTCTAGACCAT
FMO03951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbp80-RG | 1564 | CG17023-RG | 58..890 | 37..869 | 4165 | 100 | Plus |
| Dbp80-RE | 1505 | CG17023-RE | 58..890 | 37..869 | 4165 | 100 | Plus |
| Dbp80-RD | 1203 | CG17023-RD | 58..890 | 37..869 | 4165 | 100 | Plus |
| Dbp80-RG | 1564 | CG17023-RG | 1134..1169 | 867..902 | 180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 27293076..27293273 | 278..475 | 990 | 100 | Plus |
| 3L | 28110227 | 3L | 27332168..27332346 | 588..766 | 895 | 100 | Plus |
| 3L | 28110227 | 3L | 27292882..27293013 | 146..277 | 660 | 100 | Plus |
| 3L | 28110227 | 3L | 27331992..27332108 | 472..588 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 27350220..27350321 | 767..868 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 27279480..27279539 | 86..145 | 300 | 100 | Plus |
| 3L | 28110227 | 3L | 27279373..27279424 | 37..88 | 260 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| flea | 5034 | flea DMBLPP 5034bp Derived from Z27119 (g415797) (Rel. 50, Last updated, Version 6). | 1326..1385 | 668..727 | 111 | 65 | Plus |
FMO03951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:11 Download gff for
FMO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RE | 58..890 | 37..870 | 99 | <- | Plus |
| Dbp80-RE | 1028..1059 | 871..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:44 Download gff for
FMO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RA | 68..933 | 37..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:36 Download gff for
FMO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dbp80-RD | 58..890 | 37..869 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:36 Download gff for
FMO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 27279373..27279422 | 37..86 | 100 | -> | Plus |
| 3L | 27279481..27279539 | 87..145 | 100 | -> | Plus |
| 3L | 27292882..27293013 | 146..277 | 100 | -> | Plus |
| 3L | 27293076..27293271 | 278..473 | 100 | -> | Plus |
| 3L | 27331994..27332108 | 474..588 | 100 | -> | Plus |
| 3L | 27332169..27332346 | 589..766 | 100 | -> | Plus |
| 3L | 27350220..27350321 | 767..868 | 100 | -> | Plus |
| 3L | 27420679..27420712 | 869..902 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:11 Download gff for
FMO03951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 2409909..2409958 | 37..86 | 100 | -> | Plus |
| 3LHet | 2410017..2410075 | 87..145 | 100 | -> | Plus |
| 3LHet | 2423418..2423549 | 146..277 | 100 | -> | Plus |
| 3LHet | 2423612..2423807 | 278..473 | 100 | -> | Plus |
| 3LHet | 2454979..2455093 | 474..588 | 100 | -> | Plus |
| 3LHet | 2455154..2455331 | 589..766 | 100 | -> | Plus |
| 3LHet | 2473205..2473306 | 767..868 | 100 | -> | Plus |
| 3LHet | 2543666..2543699 | 869..902 | 100 | | Plus |
