FMO03953.5prime Sequence
650 bp (650 high quality bases) assembled on 2008-07-21
> FMO03953.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCTCCAACAAC
AGTAGTACCACCGATCTGGACAGCCAGGTCAATGTGGAGGATTTGCCCAT
AACGTTCAAGGTGAAGTACATTGGTTCCGAAGTGGCACGTGGCTTATGGG
GCATTAAGTATACGCGTCGTCCGGTGGACATAATGGTGGGCGTGGCCAAG
AACCTGCCGCCCAATAAGGTGCTGCCCAACTGCGAACTGAAGGTGTCCAC
CGACGGAGTCCAGCTGGAGATCATATCGCCAAAGGCCAGCATCAATCACT
GGAGCTATCCCATCGACACGATCTCGTATGGCGTTCAGGACCTGGTCTAC
ACAAGGGTCTTTGCCATGATCGTGGTGAAGGACGAGTCGAGTCCGCATCC
CTTTGAGGTTCACGCCTTCGTGTGCGACAGTCGTGCGATGGCGCGGAAGT
TGACCTTTGCCCTGGCCGCCGCCTTCCAGGATTACTCGCGACGGGTCAAG
GAGGCAACCGGTGAGGAGGAGGGCGAGGCCACGCCCAGCGACACTATTAC
ACCCACGCGACACAAGTTCGCCATCGATCTGCGAACGCCGGAGGAAATCC
AGGCTGGCGAACTGGAGCAAGAAACGGAGGCGGCAAGCTTTCTAGACCAT
FMO03953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14968-RA | 958 | CG14968-RA | 172..768 | 36..632 | 2970 | 99.8 | Plus |
| CG14968-RE | 1053 | CG14968-RE | 267..863 | 36..632 | 2970 | 99.8 | Plus |
| CG14968-RD | 1027 | CG14968-RD | 241..837 | 36..632 | 2970 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3299526..3300049 | 632..109 | 2605 | 99.8 | Minus |
| 3L | 28110227 | 3L | 3300719..3300797 | 114..36 | 395 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:43:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3260..3308 | 588..633 | 111 | 75.5 | Plus |
FMO03953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:52 Download gff for
FMO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14968-RD | 231..842 | 28..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:12 Download gff for
FMO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14968-RA | 162..773 | 28..640 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:38 Download gff for
FMO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14968-RD | 231..842 | 28..640 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:38 Download gff for
FMO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3299521..3300047 | 111..640 | 99 | <- | Minus |
| 3L | 3300723..3300801 | 28..110 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:52 Download gff for
FMO03953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3299521..3300047 | 111..640 | 99 | <- | Minus |
| arm_3L | 3300723..3300801 | 28..110 | 95 | | Minus |
