FMO03954.5prime Sequence
1085 bp (1059 high quality bases) assembled on 2008-07-21
> FMO03954.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCATTTCGGAG
TCTTGGGAAGCGGTATCATTGGTCTTACGACCGCCTTAGAACTCCAGAAG
GAGTTTCCCACAGCAAGGGTTTCCGTGATTGCGGATCGGTTTAACGAGGA
CACCGTCAGCTATGTGGCGGCTGGAATTTTCCGACCTGGAACCAGCTTTA
TGGGCCCCACCCAGAAAATTACGCAACAATGGATGACCGATGCCTTCAAC
TACTGGGATGAGCTGCGTCGCTCCAAGGAGGCTCCTCTGGCGGGCGTGTG
CCAATTATCCGGCTATATTTACTCCCGCACCTCCCCCTCCATCGTACGGA
ACCACTTTATTGAGAAACTATTGCCCGTCTACCGAAGAGCCACCGAGGAG
GAACTGAGGCTATGCAACGGCGGCTGGAAGTACGGATCCTTCTTCACCAC
ATGCCTAACGGAAAGCCGCCTCTTCTTGCCCTATGCCACTAAAAAATTCC
TGGAGAACGGAGGAGAGGTTGTCCGTCAGCATGTGAACAGCTTTTTCGAA
GTGCCGCAGAACATTGACTTGCTCCTTAACTGCACCGGAATGGGAGCCAA
GGAGTTGTGTGGGGACCAGCACTTGGTTCCCATTCGGGGTCAAGTGCTCA
AAGTGCGTGCTCCCTGGGTAAAGACGGCTTTCTACGGCGATTACGACACC
TACGTTCTTCCCGGATTTGAGACTGTGACCCTGGGAGGATGTCGCCAATT
CGACAGCTACAACACCGAGTGGTGCAAATACGATAGCATGGCCATTCGAG
AGCGTTGCTACGATTTGCTGCCCAGTCTCCGGAAAGCGGAGATCGTGCGG
GAATGTGTTGGTCTGCGGCCACACCGCTCCGTCGTTCGGGTGGAGCCAGA
ACTGATCACGAATCCGGAAGGCAAGCGGCTGAAGGTAGTCCACAACTACG
GCCACGGCGGCTACGTGTGACCACGGCTCCTGGAAACGCTATGTACGCAG
TTCGATTGGTACCGCGATCTACTAGCGGGAAACAGTAACTGCAAGCTTTC
TAGACCATTCGGTTTGGCGCCGGGCCCAGGTTAGT
FMO03954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12338-RB | 1357 | CG12338-RB | 289..1289 | 38..1038 | 4915 | 99.5 | Plus |
| CG12338-RA | 1126 | CG12338-RA | 58..1058 | 38..1038 | 4915 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10729646..10730188 | 1038..496 | 2575 | 99.1 | Minus |
| 2R | 25286936 | 2R | 10730674..10730861 | 225..38 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 10730258..10730404 | 495..349 | 735 | 100 | Minus |
| 2R | 25286936 | 2R | 10730485..10730608 | 349..226 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:44 has no hits.
FMO03954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:57 Download gff for
FMO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12338-RA | 54..1062 | 30..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:22 Download gff for
FMO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12338-RA | 50..1058 | 30..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:15 Download gff for
FMO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12338-RA | 54..1062 | 30..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:15 Download gff for
FMO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10729642..10730188 | 496..1041 | 98 | <- | Minus |
| 2R | 10730258..10730403 | 350..495 | 100 | <- | Minus |
| 2R | 10730485..10730608 | 226..349 | 100 | <- | Minus |
| 2R | 10730674..10730871 | 30..225 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:57 Download gff for
FMO03954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6617147..6617693 | 496..1041 | 98 | <- | Minus |
| arm_2R | 6617763..6617908 | 350..495 | 100 | <- | Minus |
| arm_2R | 6617990..6618113 | 226..349 | 100 | <- | Minus |
| arm_2R | 6618179..6618376 | 30..225 | 97 | <- | Minus |
