FMO03955.5prime Sequence
898 bp (898 high quality bases) assembled on 2008-07-21
> FMO03955.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATTCTATTTT
TCTGGTAGACACAACAGGACGCCAGGAATTCAATGGCGAGCAGCAGCAAA
AGAAGATTGTGTACAACAAAGAGCTGCTCCTGACAGAAAGTGACGCGCAC
AGCGAGGAGGACGAGGAACAAAATGAGGGCGCAGTGGAGCTCTTTGGCCT
AAAGTTGAACTCCAAGGAAGTGCTCGATGTCGTGAATTCCCTGCCTGACC
GAAAGAAGCCGGTATCCAAGGTTGCCAAGCAGCTGGAGGACCTCTGCGAA
AAGGTCGAGAGTGCAGTGGAGAACTCCAGCAAACCGAAAGTAGTGCCCCG
GAAGCGGGTAACAGAACTGAACCACGATGCTCCGCATCTGGACCTGCGGC
AGGAAAACCTGGAAAGTAATATGAAGAGGACGAAACAGGCCTTGAATCCA
GGACTAGAACAGGCGCATGCACTGCCCACCGTGGGAAAGAGGCAGCAACC
CATCATCAACAGAGCTGAACGCTCAAAGACCAAGGGCAAGGGATGGTTTA
ATCTGCCCGCCACAGAGATCACCGACGAGATGCGAAACGAACTGAAAATA
GTTCAGATGCGATCGGTTCTGAACCCTAAGCAATTCTACAAGAAGAACGA
CCTTAAGAGTCTGCCCAAATTTTTCCAAATCGGTACTGTGCTACCTTCGC
ATTTGGATCACTACCAAGAAAAGAAGTCCAAGAAGAAGCAGTCGCTGGTA
AATGAGTTGTTAGAAGACGAGAGCTTCCCAGAAGTTCAACAAGAGGAAGT
TCAACGAGGTTATTAAGCGCACAGACAAATACGCCTATCGGAAAAACTTG
AAGAAAATGAAAAAACTTAAGAAAAATAAAGCAAGCTTTCTAGACCAT
FMO03955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1142-RA | 911 | CG1142-RA | 45..887 | 37..880 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7473260..7473737 | 514..37 | 2390 | 100 | Minus |
| 3R | 32079331 | 3R | 7472482..7472847 | 880..514 | 1785 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:27 has no hits.
FMO03955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:23 Download gff for
FMO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 29..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:23 Download gff for
FMO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 32..883 | 29..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:23 Download gff for
FMO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1142-RA | 39..890 | 29..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:23 Download gff for
FMO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7473261..7473737 | 37..513 | 100 | <- | Minus |
| 3R | 7472478..7472847 | 514..884 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:23 Download gff for
FMO03955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3298200..3298569 | 514..884 | 99 | <- | Minus |
| arm_3R | 3298983..3299459 | 37..513 | 100 | <- | Minus |
