FMO03956.5prime Sequence
929 bp (929 high quality bases) assembled on 2008-07-21
> FMO03956.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGACGACTGCGGCGAAA
GTAATCTTGGCCTGCTGCCTGCTGGGCGCCTTCCACATTCAGATCAGCTC
GTCATCGGCCATTCCCATCTGGGAGTTCCTGACCCGCAACGAGAAGATGT
CCCACCTCTACTCAACATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCA
ACAGCCGCCGTCGGAGGCCTCCCAGTGAACCAGTGCAAGCACAACCTGCT
CGGTTACGGGTCCGCCAAGCTGCAGACGCTCTCCGACGTACAGCTGGAGG
CACTAGATCCGTATCAGCGCGATGCCAACGAGCTGATCTGGTCATCGATT
ATGGGGGACCATCCGAGCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCT
CCAACAGCCCCTGCCAACTCCTCCTGCGTCCTCTCTGATCATCCTAACGC
GCCAGCAACTTCCGCACGGAGCATCCCATGCCCACCCCATCCAGAGCTCC
GGCTCCGCCACCAATCCAATCTTCGAGAGCGGCGAGCAGAAGCACAAATA
CGCCATGGACATGGACAAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTG
AGCTCCCAATGGCCGCCGCACTGACTTCAGAACCGTCCAAAAGATTCCTC
ACCGGACCTTTGGTGATCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGA
GGACAAGATGATGCCACTGCCGCGGGACGAAGACCTGCCCTACTTTCATC
TTGGTCTGGCCGCCGCTCAGCCCACAGGCACCGCAAGATCGCCACAATCA
GCTCCTTAAAGCAGCAGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAG
CCACCCCACCAGACGCAGAGGCGTCTGTTCCGCCAGCAACAGGCGGGCAA
GCTTTCTAGACCATTCGTTTGGGCGCGCG
FMO03956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Reg-5-RA | 1653 | CG2928-RA | 506..1370 | 32..895 | 4300 | 99.9 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 939..1498 | 337..895 | 2775 | 99.8 | Plus |
Reg-5-RB | 1781 | CG2928-RB | 506..810 | 32..336 | 1525 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24788291..24788850 | 895..337 | 2750 | 99.8 | Minus |
2R | 25286936 | 2R | 24788979..24789170 | 336..145 | 960 | 100 | Minus |
2R | 25286936 | 2R | 24792791..24792905 | 146..32 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:47 has no hits.
FMO03956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:40 Download gff for
FMO03956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 506..1374 | 32..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:53 Download gff for
FMO03956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 502..1370 | 32..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:10 Download gff for
FMO03956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Reg-5-RA | 506..1374 | 32..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:10 Download gff for
FMO03956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24788979..24789168 | 147..336 | 100 | <- | Minus |
2R | 24792791..24792905 | 32..146 | 100 | | Minus |
2R | 24788287..24788850 | 337..901 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:40 Download gff for
FMO03956.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20675810..20676373 | 337..901 | 99 | <- | Minus |
arm_2R | 20676502..20676691 | 147..336 | 100 | <- | Minus |
arm_2R | 20680314..20680428 | 32..146 | 100 | | Minus |