Clone FMO03956 Report

Search the DGRC for FMO03956

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptReg-5-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03956.5prime Sequence

929 bp (929 high quality bases) assembled on 2008-07-21

> FMO03956.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGACGACTGCGGCGAAA
GTAATCTTGGCCTGCTGCCTGCTGGGCGCCTTCCACATTCAGATCAGCTC
GTCATCGGCCATTCCCATCTGGGAGTTCCTGACCCGCAACGAGAAGATGT
CCCACCTCTACTCAACATTCGCTCAATTGGTAAGCGTGCACTGCAAGTCA
ACAGCCGCCGTCGGAGGCCTCCCAGTGAACCAGTGCAAGCACAACCTGCT
CGGTTACGGGTCCGCCAAGCTGCAGACGCTCTCCGACGTACAGCTGGAGG
CACTAGATCCGTATCAGCGCGATGCCAACGAGCTGATCTGGTCATCGATT
ATGGGGGACCATCCGAGCGGAGCCAGCCTGGTGACAACGAGGCAGCCGCT
CCAACAGCCCCTGCCAACTCCTCCTGCGTCCTCTCTGATCATCCTAACGC
GCCAGCAACTTCCGCACGGAGCATCCCATGCCCACCCCATCCAGAGCTCC
GGCTCCGCCACCAATCCAATCTTCGAGAGCGGCGAGCAGAAGCACAAATA
CGCCATGGACATGGACAAGGCCTACGGCTACGGGCCGCAGTCCAGCAGTG
AGCTCCCAATGGCCGCCGCACTGACTTCAGAACCGTCCAAAAGATTCCTC
ACCGGACCTTTGGTGATCCGGGTGCGACCCGATGGCTCCCCGGTGGAGGA
GGACAAGATGATGCCACTGCCGCGGGACGAAGACCTGCCCTACTTTCATC
TTGGTCTGGCCGCCGCTCAGCCCACAGGCACCGCAAGATCGCCACAATCA
GCTCCTTAAAGCAGCAGCACTTCGCCTCTATCCTGCAGAGCGACCTCCAG
CCACCCCACCAGACGCAGAGGCGTCTGTTCCGCCAGCAACAGGCGGGCAA
GCTTTCTAGACCATTCGTTTGGGCGCGCG

FMO03956.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
Reg-5-RA 1653 CG2928-RA 506..1370 32..895 4300 99.9 Plus
Reg-5-RB 1781 CG2928-RB 939..1498 337..895 2775 99.8 Plus
Reg-5-RB 1781 CG2928-RB 506..810 32..336 1525 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24788291..24788850 895..337 2750 99.8 Minus
2R 25286936 2R 24788979..24789170 336..145 960 100 Minus
2R 25286936 2R 24792791..24792905 146..32 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:43:47 has no hits.

FMO03956.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:40 Download gff for FMO03956.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 506..1374 32..901 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:53 Download gff for FMO03956.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 502..1370 32..901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:10 Download gff for FMO03956.5prime
Subject Subject Range Query Range Percent Splice Strand
Reg-5-RA 506..1374 32..901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:10 Download gff for FMO03956.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24788979..24789168 147..336 100 <- Minus
2R 24792791..24792905 32..146 100   Minus
2R 24788287..24788850 337..901 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:40 Download gff for FMO03956.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20675810..20676373 337..901 99 <- Minus
arm_2R 20676502..20676691 147..336 100 <- Minus
arm_2R 20680314..20680428 32..146 100   Minus