FMO03958.5prime Sequence
544 bp (544 high quality bases) assembled on 2008-07-21
> FMO03958.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTACAGGCTA
TAAAGACGCTCCGCTGGACACAGCCAATGCGGGCTCTGTCCACGGTAAAC
ACCAGTTCCGGCGTACAAGGCAATCTTTCACCTGCGGCACCTGCTCCGGA
ACCGGATAAACTCTACAGCAAGCTGGAGATTGAGCTGCGGGGTATTGATC
CGGCAGTTCTGAAGAGCTACACCTGGTTTGCTACTACTGCTGCCGAGCAT
TTGGGCATTGAAAAGGGAAAATGTTGGTCACCTCGCAAGGCGCACCACGA
GCGGATGACGCTCCTGAAGTCGGTGCATATCTACAAGAAACATCGCGTAC
AGTACGAGGTGCGAACCCACTTCCGCTATATGAACTTCCACAAGTTGACG
GGCTCCACGCTAGATACATTTCTAGAGTATATTGAACGTAATCTGCCCGA
GGGCGTAGCGCTGCAGGCTTCCAGGACTGAGCTGCAGGAGATCCCAGAGC
ACTTGCGCCAGCCGCCGGAGCAAGTTGCAAGCTTTCTAGACCAT
FMO03958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS10-RA | 723 | CG4247-RA | 68..556 | 38..526 | 2445 | 100 | Plus |
| mRpS10-RB | 746 | CG4247-RB | 97..579 | 44..526 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15230096..15230349 | 273..526 | 1270 | 100 | Plus |
| 3R | 32079331 | 3R | 15229798..15230027 | 44..273 | 1150 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:54 has no hits.
FMO03958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:06 Download gff for
FMO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..560 | 38..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:57 Download gff for
FMO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34316-RB | 58..550 | 38..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:28 Download gff for
FMO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS10-RA | 68..560 | 38..532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:28 Download gff for
FMO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15230097..15230353 | 274..532 | 98 | | Plus |
| 3R | 15229791..15230027 | 38..273 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:06 Download gff for
FMO03958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11055513..11055749 | 38..273 | 98 | -> | Plus |
| arm_3R | 11055819..11056075 | 274..532 | 98 | | Plus |
