FMO03960.5prime Sequence
1105 bp (1005 high quality bases) assembled on 2008-07-21
> FMO03960.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGATGAGACCA
GCACTAAGACCAGAACTATGCGCCTGGGAATGTGCGAGGTGTGCGCCGCA
AAGGAGGCCTGCTACGCATGTCCCAAATGCGAGGTGAAAACATGCAGCCT
GCCCTGCGTCCAGATCCATAAGAAGGAGCTCAACTGCGATGGCCAGCGGG
ATCGCACCAAGTTCGTACCGCTGAGCGAGATGACCTCGCGGGAATTCATG
AGTGACTACTGCTTCTTGGAGGAGTGCACACGCTATGCAGAGAATCGAAA
ATCCGATCCGTGCAAGCGATTTACCCACGACCAAAGGAATCTCCCAGTGA
CTCAACATCGCATGCGGATGGCAGCCAAGAAGCGTAACATTAATCTGCGC
TTGCAACTGGAGAATTTCAGTCGGCACAAGGAGAACACCACGTATCTAAA
CTGGAAACTGGGACGATTCCATTGGCGTATAGAGTGGCTGTTTGCAAATA
TTCCATACGAGGCAAGCCTTCCCCGGAATGTAACTCGATTTGTGGACAAG
GAATGCAATGAGGAGCTCACGCTGCCCGATCTGGTAGCCAAGTATGTGGA
TCTGCGGCACGAGACGGCACGGGAACAACGCAAACTGCTGGCCAACCATC
AGACTGCCGGTATTGGTCAGCTGAGTTTTTGGCTTAGAGCCGAGGGCGTG
CGACGCAGCTCTACGAGGTGTTATCTCCTGGACTCGACCAAAACGCTGGC
CGAGAATCTAGTCGGCAAAACCATCGTGGAGTTTCCCACCATTTTGGTCA
CCTACGATCCGAAGCCACCAGGAGGATATGAAGCCATCGACAGCAGTGAG
GAATTCGAGGAAGAGCACGAAGAGCAGGTGCCTGTAACCAAACCAGGAAC
ATCCTCCAACGCAGTTGCGGAGGACTTAGATGATTCACCATGATGTGTAC
TATAAACTGGCTGCCAGCATTTGCTGGGTGAAGATGTTAGTGAGCCTGAA
GACGACGAAGACTCCCAGGCCACCCCTACAGACTAGTGTTGTACCTGCCA
AGCCTTTCTTAGACCATCGGTTTGCCGCGCCGGACCAGGTAGAGTGTCCA
TAAAC
FMO03960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1463-RB | 1234 | CG1463-RB | 49..1063 | 27..1044 | 4820 | 98.6 | Plus |
| CG1463-RC | 1293 | CG1463-RC | 108..1122 | 27..1044 | 4820 | 98.6 | Plus |
| CG1463-RA | 1526 | CG1463-RA | 49..1063 | 27..1044 | 4820 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12610687..12611473 | 847..61 | 3935 | 100 | Minus |
| X | 23542271 | X | 12610472..12610634 | 1011..846 | 665 | 97.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:56:44 has no hits.
FMO03960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:07 Download gff for
FMO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 44..1042 | 19..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:37 Download gff for
FMO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 35..1033 | 19..1023 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:02 Download gff for
FMO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1463-RA | 44..1042 | 19..1023 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:02 Download gff for
FMO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12610441..12610632 | 848..1044 | 93 | -> | Minus |
| X | 12610687..12611472 | 62..847 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:07 Download gff for
FMO03960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12504474..12504665 | 848..1044 | 93 | -> | Minus |
| arm_X | 12504720..12505505 | 62..847 | 100 | -> | Minus |
