FMO03963.5prime Sequence
686 bp (686 high quality bases) assembled on 2008-07-21
> FMO03963.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGCGGGAAAA
CGTGGAGCGTTGATAATATTTGAAGGATGTGATCGAAGTGGAAAGACCAC
TCAAAGCAGGCTGTTGGTTGAACTCTTGAAATCGAAGGGCATTCCGACAT
TGCCCATGAATTTCCCGGAACGCAGTTCCAGCATTGGTCAGGTGATAAAC
TCCTATTTAACGAACAGCAAGGATCTTCCGGATGAGGTGATTCACTTAAT
GTTCTCCGCCAACCGCTGGGAGCACATAAACCAGGTGAAGGAGAAGCTGC
TTGAGGGCACCACATTGGTTGTGGATCGATATTCGTTCTCTGGCGTGGCA
TATAGCGCAGCCAAAGGATTAGACTTTGATTGGTGCTATGCTCCGGAAAG
GGGGCTCATAAAACCAGATGCTGTATTTTACCTAAGAGCACCACCAAACG
ACCTTACACATCGAGGACAATACGGCAAAGAGCGTTATGAGAAAGTAGAA
TTCCAAGGTCGTGTGGCCGAAGTATTCAACCGCATTTGCTCCAAGGAGGG
CAGCTATTTTCACCAGTTCGATGCCAGACAGTCTGTAGAGGATTTACATG
CCCAGATAGCGAGCATTACGGAGGAACTCCTGCCCAAAGTGGCCACCCGA
CCTCTGGACACGTTATCGGCAAGCTTTCTAGACCAT
FMO03963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5757-RB | 992 | CG5757-RB | 167..799 | 36..668 | 3165 | 100 | Plus |
| CG5757-RA | 897 | CG5757-RA | 72..704 | 36..668 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18094165..18094532 | 484..117 | 1840 | 100 | Minus |
| 2R | 25286936 | 2R | 18093916..18094100 | 668..484 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 18094584..18094665 | 117..36 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:54 has no hits.
FMO03963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:17 Download gff for
FMO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 66..708 | 26..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:07 Download gff for
FMO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 37..679 | 26..674 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:06 Download gff for
FMO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5757-RA | 66..708 | 26..674 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:06 Download gff for
FMO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18093912..18094099 | 485..674 | 98 | <- | Minus |
| 2R | 18094165..18094531 | 118..484 | 100 | <- | Minus |
| 2R | 18094584..18094671 | 26..117 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:17 Download gff for
FMO03963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13981417..13981604 | 485..674 | 98 | <- | Minus |
| arm_2R | 13981670..13982036 | 118..484 | 100 | <- | Minus |
| arm_2R | 13982089..13982176 | 26..117 | 95 | | Minus |
