FMO03964.5prime Sequence
1179 bp (1061 high quality bases) assembled on 2008-07-21
> FMO03964.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGTACCTCTAC
AACGCTAGTATGCATTGCGAAGATGAAGAACGCGTCAATTTCTACAACAT
GGACAAGTTCTTCGTGCCCCACGTGCAGTCGATTGAGCTGGAGCAGCAGG
CGATCCTGCGGCAATACGTGCCCCAGTACGCTTATCAGTGGCCCTGGGGA
TTTGCCCCTTCCGCTTACAGTTATTACCAGGGATTCGGTAGCCTTAATAT
GATGACTATGGACATTACCAAAACCGAACCCGGTCTCGTCGGGCTTTCCT
CCAACCAACAGCAGCAGCAGCAGCAGCAGTCGCAGCAAAGCAACGCCGGC
ATGAACAGCGGTGGCCAGAACAACGGGCCCAATCCCAATGGCAATGGGAA
CGTGGTCAATGTGGTCAACTCCGGCGGTGCCGGTGGCGGCAACAATGGCA
ACGGGAATGTCCAGAGCATCGCCGCCGCTGCCAACAATAATAACAATAAC
AACAACAACGGCAGCCAATTGTGCGCCGGCTGCGGCAAGCACATCCAGGA
CCGCTATCTCCTCCGCGCCCTGGACATGCTGTGGCACGAGGACTGCCTCA
AGTGCGGCTGCTGCGACTGCCGCCTGGGCGAGGTGGGCTCCACGCTCTAC
ACCAAGGGCAACCTGATGCTCTGCAAGCGGGACTACTTGAGATTGTTTGG
CAACACGGGCTACTGCGCCGCCTGCAGCAAGGTGATCCCAGCCTTCGAGA
TGGTGATGCGTGCAAGGACCAATGTCTATCACTTGGAGTGCTTCGCTTGT
CAGCAGTGTAACCACAGATTCTGTGTGGGCGACCGTTTCTACCTGTGCGA
GAACAAGATACTCTGCGAGTACGACTATGAGGAGCGCCTGGTCTTCGCAT
CGATGGCCAATCATCCGATGCTCAAGCGACACGTCTCCTCCTTGGGCCAG
GGCTCACCGACGGGAGCGCTGGGGCGCAGATACCGCTGGTGATGCTGGGC
GCGGACCCGTGGCGGCATGTGATGCGTGGGCATGGTCAACGGACCGCGCC
ACCCCTGGCGATCCCATACAACAACATGGACCACAGAACCCGAACGGCGG
TGCTCCACGTTGCCGCTGCTGCTGCTGCTCGCGCCCCTGCATATGAGATC
ACTGGGCGGTCAGGCAGCTTCTGACCATT
FMO03964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bx-RB | 2051 | CG44425-RB | 102..1212 | 31..1128 | 5065 | 97.9 | Plus |
| Bx-RD | 2494 | CG44425-RD | 761..1655 | 247..1128 | 4000 | 97.5 | Plus |
| Bx-RC | 3413 | CG44425-RC | 597..1491 | 247..1128 | 4000 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18566696..18567138 | 249..691 | 2215 | 100 | Plus |
| X | 23542271 | X | 18566407..18566624 | 31..248 | 1075 | 99.5 | Plus |
| X | 23542271 | X | 18570561..18570887 | 815..1128 | 850 | 91.8 | Plus |
| X | 23542271 | X | 18567509..18567636 | 690..817 | 640 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 2731..2802 | 447..518 | 125 | 67.1 | Plus |
| Stalker2 | 7672 | Stalker2 STALKER2 7672bp | 3132..3208 | 432..511 | 122 | 65 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2627..2663 | 478..514 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2340..2430 | 416..509 | 112 | 59.6 | Plus |
FMO03964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:29 Download gff for
FMO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..1221 | 28..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:49 Download gff for
FMO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 69..1190 | 28..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:10 Download gff for
FMO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bx-RB | 100..1221 | 28..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:10 Download gff for
FMO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18566405..18566624 | 28..248 | 99 | -> | Plus |
| X | 18566696..18567138 | 249..691 | 100 | -> | Plus |
| X | 18567511..18567636 | 692..817 | 100 | -> | Plus |
| X | 18570564..18570896 | 818..1140 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:29 Download gff for
FMO03964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18460438..18460657 | 28..248 | 99 | -> | Plus |
| arm_X | 18460729..18461171 | 249..691 | 100 | -> | Plus |
| arm_X | 18461544..18461669 | 692..817 | 100 | -> | Plus |
| arm_X | 18464597..18464929 | 818..1140 | 92 | | Plus |
