FMO03967.5prime Sequence
733 bp (733 high quality bases) assembled on 2008-07-21
> FMO03967.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGTGGCGAT
CCGTGGGAGCCAATAATGAAGACCTGATTCGCCAACTGAAGGATCACGGC
GTCATTGCAAGTGATGCGGTGGCCCAGGCGATGAAGGAAACCGACCGCAA
GCACTACTCTCCGCGCAACCCCTACATGGACGCCCCGCAACCCATTGGAG
GAGGTGTCACCATCAGTGCTCCTCACATGCATGCCTTCGCCTTGGAGTAT
CTACGCGACCACTTGAAGCCCGGTGCACGTATACTGGATGTGGGCTCTGG
ATCTGGCTACCTCACAGCCTGCTTCTATCGTTACATCAAGGCTAAGGGCG
TTGATGCGGACACCCGAATCGTGGGCATAGAGCACCAGGCAGAGCTGGTG
CGGCGGAGCAAGGCCAACTTAAACACCGACGACCGTAGCATGCTGGACTC
CGGCCAGTTGCTGATCGTCGAGGGTGACGGCCGCAAGGGATACCCCCCGA
ACGCCCCGTATAATGCAATCCATGTAGGAGCAGCTGCTCCCGACACACCC
ACCGAACTCATCAACCAACTGGCCAGCGGCGGACGCCTGATAGTTCCAGT
CGGTCCCGACGGCGGGTCTCAGTACATGCAACAGTACGACAAGGACGCCA
ATGGGAAGGTGGAGATGACACGTCTCATGGGCGTAATGTACGTCCCTCTC
ACGGATCTTCGCTCCGCAAGCTTTCTAGACCAT
FMO03967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcmt-RA | 953 | CG2152-RA | 133..811 | 37..715 | 3395 | 100 | Plus |
| Pcmt-RC | 998 | CG2152-RC | 133..730 | 37..634 | 2990 | 100 | Plus |
| Pcmt-RC | 998 | CG2152-RC | 776..856 | 635..715 | 405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5553271..5553676 | 634..229 | 2030 | 100 | Minus |
| 3R | 32079331 | 3R | 5553931..5554068 | 229..92 | 690 | 100 | Minus |
| 3R | 32079331 | 3R | 5552965..5553049 | 715..631 | 425 | 100 | Minus |
| 3R | 32079331 | 3R | 5554129..5554184 | 92..37 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:57 has no hits.
FMO03967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:19 Download gff for
FMO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 129..816 | 29..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:10 Download gff for
FMO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 124..811 | 29..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:14 Download gff for
FMO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcmt-RA | 129..816 | 29..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:14 Download gff for
FMO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5552960..5553045 | 635..722 | 95 | <- | Minus |
| 3R | 5553271..5553675 | 230..634 | 100 | <- | Minus |
| 3R | 5553931..5554067 | 93..229 | 100 | <- | Minus |
| 3R | 5554129..5554188 | 29..92 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:19 Download gff for
FMO03967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1378682..1378767 | 635..722 | 95 | <- | Minus |
| arm_3R | 1378993..1379397 | 230..634 | 100 | <- | Minus |
| arm_3R | 1379653..1379789 | 93..229 | 100 | <- | Minus |
| arm_3R | 1379851..1379910 | 29..92 | 93 | | Minus |
