FMO03969.5prime Sequence
1010 bp (49 high quality bases) assembled on 2008-07-21
> FMO03969.5prime
CGTATAGCATACATTATACGAAGTTATCAATCCACATGTCCGAAACCCTG
CATTTGCGCGGTACCCTCATTGGCCACAATGGATGGGTCAGCCATATCAC
CACCAACCCCAAGGATCCCCACCCCATATTTTCGGCCTCCCGGGACAAGA
CCCTGATCGTGTGGAAGCTGACCCGCGATGAGGACACCAACTACGGTTAC
CCCCTTAACCGTCTCTACGGACACTCGCACTTCATCAGCGACGTGGTGCT
CTCCTCCGATGGCAACTACGCCCTGTCCGGATCCTGGGATCAGACCCTTC
ACCTGTGGGATTTGGCCGCCGGCAAGACCACCCGTCGCTTCTAGGGACAC
ACTAAGGACGTTTTGTCGGTTGCCTTCTCGGCCGATAACCGTCAGATCGT
GTCCGGCTCTCGGGACAAGACCATCAAGCTGTGGAACACCCTGACTGAGA
GCAAGTTCACCATCCAGGAGGATGGCCACACCGACTGGGTGTCGGGCGTG
CTCTTCTCGCCCAACCACTCCGATCCGATCATCGTGTCCTGCGGCTGGGA
TCGCACCGTCAAGGTCTGGAACTTGGCTAACTGCAAGTTGAAGAACAACC
ACCACGGCCACAACGGCTACCTGAACACGGTGACCGTCTCGCCCGATGGC
TATCTGTGCACCTCAGGTGGCAAGGACTCCAAGGCCCTGCTGTGTGACCT
CAATGACGGGAGAACCTGTACACTCTGGAGCACTACGACATCATCACCGC
CCTGTGCTTCTCGCCCAACCGCTACTGGCTGTGCGTGGTCTACTGATCCT
CGATCTATATCTGGGATCTGGCATGCAAGATGACCGTTGAGGAGCTGCGC
CCCTAGGTCGTTTCGCCCACGTCGAAAGCACGATCCAACCCAGTGCCTGT
CCCTAGGCTTGCTCCACCGACTGCCAGACTCTGGTTCGCCGGCTACTATG
ACAACAACATCCGCGAATAGATTGTGTCTGTTTCAGATCACGCCAGCCTT
TCTAGAACAT
FMO03969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rack1-RC | 1388 | CG7111-RC | 78..1031 | 36..991 | 3890 | 94 | Plus |
| Rack1-RD | 1175 | CG7111-RD | 147..1100 | 36..991 | 3890 | 94 | Plus |
| Rack1-RA | 1106 | CG7111-RA | 78..1031 | 36..991 | 3890 | 94 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7825704..7826338 | 991..355 | 2435 | 93.6 | Minus |
| 2L | 23513712 | 2L | 7826769..7826982 | 357..144 | 965 | 96.7 | Minus |
| 2L | 23513712 | 2L | 7827063..7827169 | 142..36 | 415 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:15 has no hits.
FMO03969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:44 Download gff for
FMO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..1005 | 25..965 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:00 Download gff for
FMO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 72..1011 | 25..965 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:44 Download gff for
FMO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rack1-RA | 66..1005 | 25..965 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:44 Download gff for
FMO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7825705..7826339 | 352..990 | 93 | -> | Minus |
| 2L | 7826775..7826979 | 147..351 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:44 Download gff for
FMO03969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7826775..7826979 | 147..351 | 96 | -> | Minus |
| arm_2L | 7825705..7826339 | 352..990 | 93 | -> | Minus |
