Clone FMO03973 Report

Search the DGRC for FMO03973

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:39
Well:73
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6870-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03973.5prime Sequence

465 bp (465 high quality bases) assembled on 2008-07-21

> FMO03973.5prime
TCGTATAGCATACATAATACGAAGTTATCAGTCGACATGTCATCCGCGTT
GACGAACCTCTTGCAATCGCTGAGAATTGTGCCCTTGGGACATGGAAAGT
CCAGTAATCAGGTGGTCGTTGTACCAAGCAAAAAGGAACGTTTAAAACTG
GAAGATCTGCCGGAGATCGCATTGGAGGAGGTGGCCCAGCACGACAGCTT
CGACGATTGCTGGGTGGTAATCTACGATAGGGTCTACGATGTGACACACT
TTCTAAGGGATCATCCCGGCGGCGACGACGTCATTATGGATCACGCAGGG
CGAGATGCCACCATCGCCTTCCATGGCACAGGACACTCGGGGGATGCCAT
CGAAATGATGAAGGATTTCTTGATCGGTCAACTGCCCACCAAGCAGCACA
TTTTTCGCACTGGCAAAAACAAGGTTTTGTCCCTGGGCATACCGGAAGCA
AGCTTTCTAGACCAT

FMO03973.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6870-RB 985 CG6870-RB 187..599 35..447 2065 100 Plus
CG6870-RA 852 CG6870-RA 187..599 35..447 2065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 17591701..17592113 447..35 2065 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:31:02 has no hits.

FMO03973.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:26 Download gff for FMO03973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 35..451 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:03 Download gff for FMO03973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 186..601 35..451 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:54 Download gff for FMO03973.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6870-RA 187..602 35..451 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:54 Download gff for FMO03973.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 17591698..17592118 25..451 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:26 Download gff for FMO03973.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 17591698..17592118 25..451 98 -> Minus