FMO03977.5prime Sequence
619 bp (619 high quality bases) assembled on 2008-07-21
> FMO03977.5prime
TTCGTATAGCATACATAATACGAAGTTATCAGTCGACATGGGTATTGATA
TCAACCACAAGTACGATCGCAAGGTTCGCAGAACCGAGCCCAAATCCCAG
GATGTGTACCTGCGCCTGCTGGTCAAGCTGTACCGCTTCCTTCAGCGCCG
CACCAACAAGAAGTTCAACCGCATCATCCTGAAGCGTTTGTTCATGAGCA
AGATCAACAGGCCGCCGCTATCGCTTCAGCGCATCGCTCGCTTCTTCAAG
GCCGCCAACCAACCGGAGTCTACCATCGTGGTCGTCGGCACCGTCACCGA
CGATGCCCGCCTCCTGGTGGTGCCCAAGCTCACCGTGTGCGCCCTGCACG
TCACGCAGACCGCCAGGGAGCGCATCCTGAAGGCCGGCGGTGAGGTCCTG
ACCTTCGATCAACTGGCTCTCCGATCGCCCACCGGCAAGAACACGCTGCT
GCTGCAGGGCAGGCGTACCGCCCGCACCGCCTGCAAGCACTTCGGCAAGG
CTCCCGGTGTGCCCCACTCGCACACCCGCCCCTATGTCCGCTCTAAGGGA
CGCAAGTTCGAGCGTGCTCGTGGTCGTCGCTCCAGCTGCGGCTACAAGAA
GGCAAGCTTTCTAGACCAT
FMO03977.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL18-RB | 756 | CG8615-RB | 92..655 | 38..601 | 2805 | 99.8 | Plus |
| RpL18-RC | 694 | CG8615-RC | 30..593 | 38..601 | 2805 | 99.8 | Plus |
| RpL18-RA | 724 | CG8615-RA | 60..623 | 38..601 | 2805 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7240304..7240779 | 601..126 | 2365 | 99.8 | Minus |
| 3L | 28110227 | 3L | 7240855..7240942 | 127..40 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:14 has no hits.
FMO03977.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:15 Download gff for
FMO03977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 52..632 | 30..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:15 Download gff for
FMO03977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 50..630 | 30..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:43 Download gff for
FMO03977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL18-RA | 52..632 | 30..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:43 Download gff for
FMO03977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7240295..7240777 | 128..612 | 98 | <- | Minus |
| 3L | 7240855..7240951 | 29..127 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:15 Download gff for
FMO03977.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7233395..7233877 | 128..612 | 98 | <- | Minus |
| arm_3L | 7233955..7234051 | 29..127 | 94 | | Minus |
