FMO03979.5prime Sequence
1239 bp (1036 high quality bases) assembled on 2008-07-21
> FMO03979.5prime
ACTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGCTAAATT
ATTGCAACGCGTAGAAATTACGTTACGCAGCTTTTACATTTTTAACTCGA
CTTTTGGCCAAGTTGAAGGCGAGGAACACAAGAAGGTTTTGTTTTACCAT
CCAAATGACATTGAATTAAATACGAAAATCAAAGATGTGGGACTAAGTGA
GGCCATCATAAGGTTCACTGGAACTTTTACATCTGAAGATGATTGCCAGG
CCTTGCATACCCAGAAAACCACACAACTCTTCTACCAACCCGAGCCAGGG
TATTGGTTAGTACTGGTCCTGAATGTTCCCAAGGAGGTGCGCTTAAAGGA
GGGCGTGGAGGTGGCCGATTATCGGGGTGCCGAGATCTCCGACAGGATTT
ATAGAGCAATACTTAGACAATGCTATCAAATGTTTCGCTTTCAAAACGGA
TGTTTCTCCTCCTGCGGAAGTGAAGAACCTAATCCGGATAAGCGTAGGGA
ACTGCTCTGCCAGAAGCTACTCCAGTTCTATGATCAGCATCTGACCAACC
TGAGGGATCCCGCGCAATGTGATATCATCGATATGCTGCATTCCATTCAG
TATCTGCCATTGGATAAAACGCTCTTCTTGCGGGCCCAAAACTTTGGCAC
CCTGTGCGAGACCTTCCCCGACATCAAGGAGAGCATAATGCTCTACCAGG
AGCAGGTCCTTTGTGGCGGAAAACTTAGCCCGGAGGATCTGCACTGCGTG
CACTCGTATGTCGTGCAACACGTGCTGAAAGTCGAGGCCAGCAGTTCCAC
CATTGCAGTTTCTCCTTCACTAAAGCGAAGCATAAGGTGAATGCCAGGTG
GGCGGATTCGTAAGAAAGTCGTCAGACGTCGCAGAGATGAACATGACGCT
GTGAATGAGGAAGATCATCCAATGAAGGTCTATGTGACACTGGACAAGGA
GGCCAAACCCTACTACTTGCTCATCTACCGCGCTTTGCACATAACTCTGT
GTCTGTTTCTGAATGCTGACCAGTTGCGCCGAAACAAGATCTCTACGACG
ATCTCATGCCTACATGGCTCCCACTGACTTCGTTGGACCGGGACTATCAA
GCGAGTGAACAAAGAAGGCGGTGGGGGCTTGCAAGCAGACACTCCAGCGG
TAACAGCGAACGGCCGAGTACTGTCATAACGAACAAGCTTGCCACACAAA
CGAACATTCAGAAGAACTCCGTGTCTCCCCAAAGGCGCG
FMO03979.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ccz1-RB | 1531 | CG14980-RB | 59..1247 | 40..1212 | 5220 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3898004..3898798 | 1015..221 | 3770 | 99.4 | Minus |
| 3L | 28110227 | 3L | 3898862..3898961 | 221..122 | 500 | 100 | Minus |
| 3L | 28110227 | 3L | 3899014..3899098 | 124..40 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 3897822..3897932 | 1129..1023 | 300 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:20 has no hits.
FMO03979.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:11 Download gff for
FMO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccz1-RB | 56..1202 | 37..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:00 Download gff for
FMO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14980-RB | 56..1202 | 37..1172 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:30 Download gff for
FMO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ccz1-RB | 56..1202 | 37..1172 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:30 Download gff for
FMO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3898862..3898959 | 124..221 | 100 | <- | Minus |
| 3L | 3899015..3899101 | 37..123 | 98 | | Minus |
| 3L | 3898004..3898797 | 222..1015 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:11 Download gff for
FMO03979.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3899015..3899101 | 37..123 | 98 | | Minus |
| arm_3L | 3898004..3898797 | 222..1015 | 99 | <- | Minus |
| arm_3L | 3898862..3898959 | 124..221 | 100 | <- | Minus |
