FMO03982.5prime Sequence
1224 bp (1027 high quality bases) assembled on 2008-07-21
> FMO03982.5prime
GTATAGCATCCATTATACGAAGTTATCAGTCGACATGGGCATTGCCTTGA
TGTTCCTGCTGGCCCTGTACCAGATGCAGTCGGCCATCCACAGCGAGATC
ATCGATACGCCCAACTATGCGGGCAACTCGTTGCAGGACGCTGACTCCGA
GGTGAGTCCACCGCAGGACAATGACCTGGTAGATGCACTGCTCGGCAACG
ATCAGACCGAGAGGGCGGAGCTGGAGTTCCGGCACCCCATCTCTGTGATT
GGCATCGACTACTCGAAGAACGCCGTGGTGCTGCACTTCCAGAAACACGG
CCGGAAACCGCGCTACAAGTACGATCCCGAGCTGGAGGCCAAGCGAAGGT
CCGTGCAGGACAACTTCATGCACTTCGGCAAGAGGCAGGCGGAGCAGCTG
CCACCGGAGGGCAGCTATGCTGAATCCGATGAACTGGAGGGCATGGCCAA
GCGAGCAGCTATGGATCGGTATGGCAGAGATCCCAAGCAGGACTTCATGC
GGTTTGGTCGGGATCCGAAACAGGACTTCATGAGGTTTGGCAGGGATCCA
AAGCAGGACTTCATGAGATTCGGTCGGGATCCCAAGCAGGATTTCATGAG
ATTCGGTCGAGATCCCAAGCAGGATTTCATGAGGTTTGGACGCACTCCGG
CTGAGGATTTCATGAGGTTCGGACGCACTCCGGCGGAGGACTTCATGAGG
TTCGGACGCTCCGACAATTTCATGCGCTTCGGACGCAGTCCCCACGAGGA
GCTTCGCAGTCCCAAACAGGATTTCATGCGATTCGGTCGCCCGGACAACT
TCATGCGCTTCGGGCGTTCCGCTCCGCAGGATTTTGTGCGCTCCGGGAAG
ATGGACTCAAACTTCATTCGATTCGGTAAGAGCTTGAAGCCCGGCGGCTC
CCGAGTCCCAGCCAGTCAAGTCCAATCAAGGCAACCCAGGCGAACGCAGT
CCAGTGGACAGGCCATGACGGAGCTGTCAAGAAACAGGAGCTGCAGGATC
AGCAGGTGAGAACGGCGCACAGGCGACCACCACGCAGGATGGGAGTGTGG
AACAGGACAGTTCTCGGGCAGGCAAGCTTTCTAGAACCAATCGTTGGGCG
CGCCGGGCCAGGTAGGTGGTCATATCATATCATATCAAATCATTATCCCA
CTTAGCCTAGGATCTGCCAGACTGTGGCCTGGAATTCTCCCAATAAAAGG
CCCCGGGCGCCAACCGAGGAGCGG
FMO03982.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FMRFa-RA | 1427 | CG2346-RA | 109..1141 | 35..1064 | 5030 | 99.4 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 553..750 | 512..709 | 570 | 85.9 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 586..783 | 479..676 | 570 | 85.9 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 608..815 | 468..681 | 320 | 77.6 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 542..755 | 534..741 | 320 | 77.6 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 553..614 | 578..639 | 190 | 87.1 | Plus |
| FMRFa-RA | 1427 | CG2346-RA | 652..713 | 479..540 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9909139..9910164 | 35..1058 | 4920 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9909583..9909780 | 512..709 | 570 | 85.9 | Plus |
| 2R | 25286936 | 2R | 9909616..9909813 | 479..676 | 570 | 85.9 | Plus |
| 2R | 25286936 | 2R | 9909572..9909747 | 534..709 | 310 | 78.4 | Plus |
| 2R | 25286936 | 2R | 9909638..9909813 | 468..643 | 310 | 78.4 | Plus |
| 2R | 25286936 | 2R | 9909583..9909644 | 578..639 | 190 | 87.1 | Plus |
| 2R | 25286936 | 2R | 9909682..9909743 | 479..540 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:03 has no hits.
FMO03982.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:04 Download gff for
FMO03982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FMRFa-RA | 103..1149 | 26..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:25 Download gff for
FMO03982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fmrf-RA | 106..1152 | 26..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:25 Download gff for
FMO03982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FMRFa-RA | 103..1149 | 26..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:25 Download gff for
FMO03982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9909139..9910164 | 35..1058 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:04 Download gff for
FMO03982.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5796644..5797669 | 35..1058 | 99 | == | Plus |
