FMO03984.5prime Sequence
807 bp (807 high quality bases) assembled on 2008-07-21
> FMO03984.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGCCGCTCCA
ATTCGTTTTGCTGGGCTGTCTGTTCATCGCTCAGGGGATATGCCACACTC
TGCCGGATCCCAAGCTAAGGGTGCCTCGTGAAACTATCAACATTCCCACG
CATCTCTTCAAGCCAGTGAGTCCGAAATCGAGCAACAAACCTATTTCTAA
TAGATCATCCTTAAATGGCGGAAACAGCTCTGCCCTGGCCGAAGCAAATA
ACGATGTCGAGTTTCTAGAGAGATCTAGCGGTGAAGTGGAGGAGGTGACC
GACACCTACGAAGAGGAGGACGTTCCACTCCGACCTATCCCCTTCCAACC
TCGACCGTTTTATCCTCAGATCCCTCCCCGATCCAACGGTTTCCCCATTC
GTCAACCCAACTATGACAATGCATTCCAAACCGATTACAATGTGGGTCCC
AGAGGCAGCGGCTTCGACAACAGACCTTTTCCCAGTTCCCCGGATTTCCG
TGGCAGAGGCATTCGACCAATTCCTGACTCCCCATTCCGCAATCAAAACT
TAGGAACCTTTGTATCTCGACCGGTACCTATGCCATCCAGTGGTTCCATT
ATCCCCCTTATCGCCGGTGGTTCCAGTATTCCGACTGGTAGAAGTGGTCC
CCTTGGTTCCGGGGGCTCTTCTAACAACTTTTACCGGAGCGAATCCTATA
GCTACACATCGGATGGAAGAGGACCTCCCCAAATCGAGCGGGATGTGTTC
GACTCGCGGGATGGATTTGGATCATCTTATCGCAACTTTGCAAGCTTTCT
AGACCAT
FMO03984.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10680-RB | 1272 | CG10680-RB | 92..848 | 33..789 | 3770 | 99.9 | Plus |
| CG10680-RA | 1026 | CG10680-RA | 55..811 | 33..789 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19965062..19965278 | 573..789 | 1085 | 100 | Plus |
| 2L | 23513712 | 2L | 19964840..19965013 | 403..576 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 19964424..19964581 | 113..270 | 790 | 100 | Plus |
| 2L | 23513712 | 2L | 19964642..19964775 | 269..402 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 19964227..19964281 | 33..87 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:45 has no hits.
FMO03984.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:02 Download gff for
FMO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 48..822 | 23..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:20:27 Download gff for
FMO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 47..821 | 23..799 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:23 Download gff for
FMO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10680-RA | 48..822 | 23..799 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:23 Download gff for
FMO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19964220..19964281 | 23..87 | 92 | -> | Plus |
| 2L | 19964339..19964365 | 88..114 | 100 | -> | Plus |
| 2L | 19964426..19964581 | 115..270 | 100 | -> | Plus |
| 2L | 19964644..19964775 | 271..402 | 100 | -> | Plus |
| 2L | 19964840..19965010 | 403..573 | 100 | -> | Plus |
| 2L | 19965063..19965289 | 574..799 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:02 Download gff for
FMO03984.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19964220..19964281 | 23..87 | 92 | -> | Plus |
| arm_2L | 19964339..19964365 | 88..114 | 100 | -> | Plus |
| arm_2L | 19964426..19964581 | 115..270 | 100 | -> | Plus |
| arm_2L | 19964644..19964775 | 271..402 | 100 | -> | Plus |
| arm_2L | 19964840..19965010 | 403..573 | 100 | -> | Plus |
| arm_2L | 19965063..19965289 | 574..799 | 98 | | Plus |
